Takifugu rubripes (torafugu): 101068222
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Entry
101068222 CDS
T02386
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101068222 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101068222 (pan2)
Enzymes [BR:
tru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101068222 (pan2)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101068222 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
101068222 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
101068222
NCBI-ProteinID:
XP_011600996
Ensembl:
ENSTRUG00000014260
UniProt:
H2UHN6
LinkDB
All DBs
Position
3:complement(15119064..15126234)
Genome browser
AA seq
1209 aa
AA seq
DB search
MMNFDGLDPGMGEYPPSLHGTLDAGMEPSLDPHLNPGLLQGVELDPEGLTVTVPESVHLM
EGMFSELHSVVSEVGIPVTATHFDLQEEMLWMGNHRGHVTSFFGPTMDRHSSFQVHATDD
VRHIHSLETGVLFLSKSNLKCHTRGGLVMFDYPMDEGADMHSLLMTDNNCLLMGGLQNYV
VEVDLNTVQEAQKFTVEVPGVAILRQSNRYFFCGHTSGKITLRDLRTFKMEHEFDAYSGS
LSDFDVHGNLLAACGFSSRGLNGLSCDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYT
SRLAIISQTGQCQFCEPTGLANMADIFHVNTVGQLLMSFDVSASKQALAFGDSGGCVHLW
SDAPEVSFNDYSRETDFAVPCHVDTLPQLDWNHDLLPLSLIPMPLTSTEPLLSDWPAALA
TPSPRRAPPADPEILRTMKTVGFIGYAVNPRTRPRNQVPYKLKDPEQDYDNYNQIPESPI
GREEEPHLYMVTKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLY
FLEPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLI
LADSDEQTGKAKLGRLIQSWNRFILAQLHQETQEQEGPQAYRGASSSSLGSSGESVIGKL
FGCEVENSSLCRCGKETVRTSLTLLFTMHYPEHNSQDKVKEYDFAEILKRSICLEQSTQA
WCENCEKYQPTVQTRNIRCLPDVLVINCEVNSAKEAEFWRVQAEYAFNKAVQKEKTEPAK
PKEPSPMPTEWCLDGEEMSSMEGFTFDTRVEDLRHVWIPLSLKMSISKNQGLEINSWSEG
EELSEAEEAEGASLYDLVVTVPHIQDTRTGGNLVTHIKVGETYHQRKEGVTHQQWYLFND
FLIEPIDKTEAVQFDVSWKVPAILYYAKRNYHTKYDLRIKNPIDASVLLTEASLARKQRK
SHATFIPLMVSEMPQARDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRG
QGANEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDT
GVRFVGHGLQKDFRVINLLVPKDQVVDTVYLFHLPRKRMISLRFLAWNFLELNIQGETHD
SIEDARTALQLYRKYLDLSRGGGSDEVRKVLKGLYEKGRQLDWKVPDSDTGDGQGSPKSA
AVFPSVMGL
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacttcgacggtctcgaccctgggatgggtgagtacccacccagccttcacgga
actttagatgcggggatggagccctccctggacccccatctcaacccgggtttactacag
ggtgtggagctcgaccccgaggggcttactgtgaccgtccccgagtctgtgcacctcatg
gagggaatgttttccgagctccacagtgtagtctcggaagttggcatcccagtcactgca
acacactttgatctccaggaggaaatgctctggatggggaaccacagaggtcatgtcacc
tcattctttggaccaacaatggatcgtcattcttctttccaagtgcatgcgacagatgac
gtgcggcacattcacagtcttgaaacaggcgttttgtttctttcaaagtccaatctcaaa
tgccacacgcgcggggggctcgtgatgtttgactacccgatggacgaaggcgctgacatg
cacagtctcctcatgactgacaacaactgtttgctgatgggcggactgcagaactacgtg
gttgaagttgacttgaacactgttcaagaagctcagaagttcaccgttgaagtccccggt
gtggcgatattgcgacaaagcaatcgttacttcttctgcggacacacttctggcaaaatt
accctgcgagacttgcgcaccttcaagatggagcacgagtttgacgcctactctggcagt
ctgtcagactttgatgttcatgggaaccttctggctgcgtgtgggttctccagccgaggt
ctaaatggcctgtcgtgcgaccgtttcctcatggtgtatgaccttcggatgatgcgagct
gtgacaccacttcaggttcacgtggacccgctcttcttacgtttcattcctacctacacg
tcacggctggcgatcatctcacagacgggtcagtgccagttctgcgagcccaccggtctc
gccaacatggcggatatctttcacgtcaacacagtgggccagttgctcatgagcttcgac
gtgtctgccagcaaacaagctttggccttcggggattctggcggatgcgtccatctttgg
tcggacgccccagaggtttcgtttaacgactattcccgtgagacggattttgcggtgccc
tgccacgtggacacgctgcctcagctggactggaaccacgacctgctgccgctctcgctc
atccccatgccgctgaccagcacggagccactgttgtcagactggcctgctgcactggcg
acacccagccccagacgagctcctcccgcagaccctgaaatcctgcgcacaatgaaaaca
gtcggtttcatcggttatgcagtgaatcctcgcacccgccctcgaaaccaggttccttac
aaactgaaggatccagagcaagattatgacaactacaaccagatcccagagtcaccgatt
gggcgcgaagaagagccgcacctctacatggttaccaaaaaatacagaaaggtcacaatt
aaatactccaaacttggactggaggactttgatttcaagcattacaacagaaccttgttt
gctggcctggagcctcacatccccaatgcctattgtaattgcatgatccaggttttgtat
ttcctggagccaatccggtgtttggtgcagaatcatctgtgtcagaaggagttctgcttg
gcctgtgaacttggatttctcttccacatgttggatttgtcgcgaggggatccgtgtcag
gccagtaacttcctgcgagcatttcgaactatcccggaagcctcggcactgggtctgatc
ctcgctgactcggatgagcaaacgggcaaggccaaactgggtcgcttgatccaaagctgg
aaccgcttcatcttggcccagctccaccaggagacccaggaacaggaaggccctcaggcc
tacagaggagccagcagcagttctctgggttcctctggtgagtcggtcatcgggaaactg
ttcggatgtgaggtggagaacagcagtctgtgtcgctgcggcaaagagacggtccgcacg
tcgctaacgctgctgttcaccatgcattaccctgaacacaactctcaagacaaagtaaag
gagtacgactttgccgagatcctgaagaggagcatctgtctggagcagagcacccaggcc
tggtgtgagaactgtgagaagtatcagcctacggtgcagacccgcaacatccgctgcctc
cccgacgtcctggtcatcaactgtgaggtgaacagcgctaaagaggcggagttttggagg
gtccaggctgagtacgccttcaataaggccgtccaaaaggagaagacggaacctgcgaaa
cctaaagagccatcacccatgcccaccgagtggtgcctggatggcgaggagatgagcagc
atggagggcttcaccttcgatacgcgggtggaggacctgcgccacgtctggattcctctc
agcctcaagatgtccatcagtaaaaatcagggtctggagatcaacagttggtctgaggga
gaagagctgagtgaggccgaagaggccgagggcgcctccctctatgacttggtggtcacc
gtgccacatatccaggacacgcgcacgggtgggaatttggtcacgcacatcaaagtcgga
gagacgtaccatcaaaggaaagagggcgtcacacaccagcagtggtacctcttcaatgat
ttcctcatcgaacccatcgataagactgaagccgtccagttcgacgtgagctggaaagtg
ccagccattctgtattacgccaagaggaactaccacaccaaatacgacctacgcattaaa
aatcccatagatgccagcgtgctgctgacagaggcctcgctggctcggaagcagaggaag
agccatgccaccttcatccctctcatggtcagtgagatgccacaggccagagacctggtg
ggcctggacgccgagtttgtcacgctcaaccaggaagaggcagaactccgcagtgacggc
acaaagtcaaccatcaagccgagccagatgtctgtggccaggatcacctgtgtgaggggg
cagggggccaatgaaggggtccccttcatcgacgactacatctctactcaggagcaggtg
gtcgattacctgacgcagtattctggcatcaagcctggagacttggatgcaaagatttct
tcaaagcatttgaccacactcaagtcgacgtacttgaagctgcgtttcctcatcgacacg
ggagttcgctttgtgggtcacggcctgcagaaggacttccgggtgatcaatctattggtt
cctaaagatcaggtcgtcgacaccgtctacctgtttcatttaccccgcaagaggatgatt
tctttgaggtttctcgcctggaacttccttgaactcaacattcagggggaaacccatgac
agcatagaggacgcccgcaccgccctgcagctgtacaggaagtacctggatctgagccgt
ggaggtgggtcagacgaagtgaggaaggtcctgaagggactctatgaaaaaggccgccag
ctggactggaaagtcccggattctgacacaggagatggtcaaggtagccccaaaagtgcg
gctgtgtttccctctgtgatgggactgtga
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