Takifugu rubripes (torafugu): 101068311
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Entry
101068311 CDS
T02386
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101068311 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tru03400
]
101068311 (lig3)
Enzymes [BR:
tru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101068311 (lig3)
DNA repair and recombination proteins [BR:
tru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
101068311 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
101068311
NCBI-ProteinID:
XP_011609533
Ensembl:
ENSTRUG00000010827
LinkDB
All DBs
Position
15:complement(8112388..8118674)
Genome browser
AA seq
998 aa
AA seq
DB search
MQRVLIFGAYKSISVCLQPFKTHVRCPHIWKGFSAVRPLNLPSQIYHFYPASGTPRLLRD
IDTPPRQDFSSQADMAEQRFLVEYAKRGTAGCKKCKDKIVKGIVRIGKIVPNPFSESAGE
MKEWYHVKCIFEKLERARATTKKIEDLTELEGWEDLQDEDKDLINKHVSDLMAKVNASPK
KKVQAKLNTSGHLMAPPADPSINAPRKFSGFTAAKAGTSTSSSTSSSTSSPVSSSSPARV
QGSSLSSQFSDPQHKDCLFREFRKLCGTVAENNSYNAKTQIIENFLRKGTGGDKFHGDLY
LTVKLLLPGVVKSVYNLNDKQIVKLFSRIFGSNQDEMVRDLEQGDVSETVRVFFESSKSF
PPASKSLLTIQEVDASLTRLAQLTKEDEQQTELEFIAKKCTSNDLKCIIRLVKHDLKMNS
GAKHVLDAVDPNAYDAFKASRNLGDVIDRVLKNQQEASNGSGPRKLLTVEASLMTPVQPM
LAEACKSVEYAMKKCPNGMYSEIKYDGERVQVHKNGDNFSYFSRSLKPVLPHKVAHFKDY
IPQAFPGGHSMILDAEVLLIDTQTSKPLPFGTLGIHKKAAFQDAKVCLFVFDCIYFNGTS
LMERPLCERRKFLHNNMVEVPNRILFSEMKHVTRAADLADMITRVIREGLEGLVLKDVKG
MYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWC
TVTKCSGGYDDAMLARLQKELDVVKISKEPSKIPNWLKIVKNYYPDFIIRNPEEAPVWEI
TGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLNQLKELYRISKENSAFKVTAGP
SDNDKPSSGDSGGNSPPASSRGGATPKKRASEGPSKPKAVKSQPRTPGPKAPSAKKVKKS
ETVHSNGKSIEVKRAEPKKDQTLLDIFNGVKLFLPLSIQDFDKLKRYFVAYNGDLVPDYD
AATATHTMAEPDEDSGAQKVTPGWIWECIRKRRVVPPC
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgcagagggttcttatttttggagcttataaatccatcagtgtatgtttacaaccgttt
aaaacgcatgtcaggtgtccgcacatctggaaaggcttttccgctgtccgtccattaaat
ttaccctcacagatctatcatttctacccggcctccggcactcccagactcctccgggac
attgacactcccccccgtcaggatttctccagccaggcagacatggcggagcagaggttc
cttgtggagtacgccaagcgcggcactgcgggatgcaagaaatgcaaggacaaaatcgtg
aagggcatagtgcgcataggaaagatcgttcccaaccctttcagtgagtctgcgggggag
atgaaagagtggtaccatgtcaaatgcatttttgagaagctggaaagagccagagccacc
acaaagaagatcgaagacctgactgagctggagggctgggaggacctccaggatgaggac
aaagacctcattaacaagcacgtttcagacctgatggcaaaagtcaacgccagtccaaag
aagaaggtccaggccaagctgaacaccagcggccatctgatggctcctcccgccgacccc
tccattaacgcccctcgcaagttctcaggcttcaccgctgcgaaggcgggcacctccacc
tccagctccacctccagctccacctccagccctgtgtcctcgtcctctcctgccagagtc
cagggcagcagcctgtccagccagttctctgacccccagcacaaagactgcctcttcaga
gagttccgcaaactctgcggcacggtggccgaaaacaacagctacaacgccaaaacgcag
atcatcgagaacttcctgaggaagggcaccggtggagacaagttccacggagatctttac
ttgacggtcaagctgctcctgcccggcgtcgtcaaaagtgtttacaacctgaacgacaag
caaatcgtgaagctcttcagccgcatattcggaagtaaccaggatgagatggtgcgcgac
ctggagcagggtgacgtgtcggagactgtccgggtgttcttcgagagcagtaaatccttc
cctccggcctccaagagccttctgaccatccaggaggtggacgcctcactgacccgcctc
gctcagctgaccaaggaggacgagcagcagaccgagctggagtttatcgccaaaaaatgc
acctctaacgacctgaaatgcataattcgactggtcaaacatgacctgaagatgaactcc
ggagccaaacacgtgttggacgcggtggatcccaacgcttacgatgccttcaaagcttcc
cgaaatctgggcgatgtgatcgaccgtgtgctgaagaatcagcaggaggcctcaaacgga
tcagggcccaggaaactcctcactgtggaagcttcactcatgacgcccgtccagccgatg
ttggccgaagcttgtaaatctgttgaatatgccatgaagaagtgccccaacgggatgtac
tcggagatcaaatatgacggggaacgagttcaggtccacaagaacggagacaacttcagt
tacttcagccgcagcctgaagccagtgctgccacacaaagtggcccacttcaaggactac
atcccgcaggcgttcccaggaggtcacagtatgatcctggacgctgaggtcctgctgatc
gacactcagaccagtaaacctctgccctttggaactctgggcattcacaagaaagcagcc
tttcaggacgccaaagtttgcctttttgtattcgactgtatttacttcaatggcacaagt
ctcatggagaggccactgtgcgaacgcaggaagttcctgcacaacaacatggttgaagtt
cccaacaggatcttgttctcagagatgaagcatgtgacgagggcagctgatctggccgac
atgatcacccgggtcatcagggaaggactggaaggactggtgttgaaggatgttaagggc
atgtatgaaccagggaaacgacactggctgaaggtcaagaaggactacttaaatgagggc
gcaatggccgacacggccgacctggtggtgctcggcgccttctacggaaaaggctccaat
gggggcatcatgtccagtttcctgatgggatgttatgaccccgactctaagaaatggtgc
accgtcaccaagtgttccggaggctacgatgacgccatgttggctcgccttcagaaggag
ctggatgtggtcaaaatcagcaaggagccgagcaaaatcccaaactggctgaaaattgtc
aagaattattacccagatttcattatccgtaatcctgaggaggctccggtgtgggagatc
accggagcagagttctccaaatctgagatgcacacagctgacgggatatccatccgtttc
ccccgaatgacccgtatccgtgacgacaaggactggaagactgccaccaacctgaaccag
ctcaaggaactttaccgcatatccaaagagaactccgccttcaaggtgacggctgggccg
tctgacaatgacaaaccctcatcaggagacagcggaggaaactcgccgcccgcctcctcc
cgaggtggcgccacacccaagaaaagagccagtgaaggtccttcaaaaccaaaggcggtg
aaatctcagcctcgcactcccggccccaaggctccgagcgctaaaaaggtgaaaaagagt
gaaactgtccacagtaatgggaaatcaattgaggtgaagagggcggagccgaagaaagat
cagacgctgctggacatcttcaatggagtgaagctgttcctcccactgtcgattcaggac
tttgacaaactcaagcgctacttcgtagcgtacaacggcgacctggtgccagactacgac
gccgccacggccacgcacaccatggccgagcctgatgaggacagcggggctcagaaggtg
acgcccggctggatctgggaatgcatccggaagaggcgcgtcgtcccaccctgctga
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