Takifugu rubripes (torafugu): 101070305
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Entry
101070305 CDS
T02386
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04140
Autophagy - animal
tru04148
Efferocytosis
tru05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101070305 (vps18)
04148 Efferocytosis
101070305 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
101070305 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tru04131
]
101070305 (vps18)
Membrane trafficking [BR:
tru04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101070305 (vps18)
Hops complex
101070305 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_16
zf-RING_Vps41
zf-C3HC4_2
zf_RING_Vps8
zf-RING_5
zf-RING_UBOX
zf-C3H2C3
zf-ANAPC11
zf-RING_2
DUF5600
zf-RING_11
zf-rbx1
KNOX2
Apolipoprotein
DUF1664
DUF4446
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
101070305
NCBI-ProteinID:
XP_003971597
Ensembl:
ENSTRUG00000013062
LinkDB
All DBs
Position
16:complement(6850313..6854779)
Genome browser
AA seq
1014 aa
AA seq
DB search
MCSAYRNIAGDYTPGLGLEECGEIRWFTLHSAMASILDEYEDSQNRGKSAQRLSRLSTTN
VGIPHTGFVNVRLEEEKPIFNKQRVDFTPPEKINHLVVCNNQLCMNLGKDSLLRIDLTKP
DQRNQIELGRKDDSTVHRLFLDPTGSHLLIGLSTRECLYLNRNTQKVRSLSRWRGHLIEC
VGWNKQFGNETNTGPILVGTSQGVIFEAEISATEASLFNTNPDQYFRQVHSLEEDGNPAP
VCCLEVERGLENKDYIIATTRKRLFQFVGKEVEGSEQQCFSSIFSQNQDQLPSFQEFPAN
MGYSEITFYTSKLRTLPNAFAWMMGNGVLYGQLDFVRPNSLLSDVQVWEYTSDIDISANK
PISIVLTQFHFLLLLHDRVKAICTLNGEVVYEDVFPDKAGTLKKMIKDPVGGLVWIYTEK
AVFRYHIQREARDVWQMYMSMNRFDLAKEYCRDRPECMDMVLAKEAEHCFQNKRYLDSAK
CYALTQKYFEEIALKFIEAKQEEALKEFLLKKLNNLKQNERTQITLLVTWLSELYLNQLG
QLESDGNTIIFQETRKEFHDFLSNPKHKECLFNNRSTIYDLLASHGNVDDMVYFSVVMQD
YERVISHYCQHDDYSAALEVLSKHCDPKLFYKFSPVLMQHIPKKVVDAWVQMGKRLDPKK
LIPALMNYSQMGSSQQINETIRYIEFCVYEMTVTEEAIHNYLLSLYARYKPDSLLWYLEQ
AGTQASEIHYDLKYALRLCSEHGYLQACVLVYRIMELYEEAVDLALQVDVDLAKSCADLP
EDDEELQKKLWLKIARHVVQEEKDVKKAMNCLSSCNLLKIEDILPFFPDFVTIDHFKEAI
CSSLEEYNQHIDELKQEMEEATESAKRIRQDIQEMRNKYGVVDSQEKCASCDFPLLSRPF
YLFLCGHMFHSDCLFQEVTPQLSSYKQTRLEELQRKLAATAQTSKSRHRPAPKEEGDTSS
IGKGSAVTSREQIKSDIDDIVASECVYCGELMIKSIDKPFIDPEKFEEEKSSWL
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagtgcgtaccgaaatatcgccggagattacacaccaggactcggtttagaggaa
tgtggtgaaataaggtggtttacgcttcattctgccatggcatcgattctggacgagtac
gaggactcgcagaaccgagggaaaagcgctcagcggctaagtcgcttgtcgaccacaaac
gtcgggataccgcatacaggtttcgtcaatgttagactcgaagaagagaaacccatattc
aacaagcagagggtcgatttcactccaccagagaagataaatcatcttgtcgtctgcaat
aatcaactctgcatgaatctaggaaaggattccctgctgaggatcgacctgaccaaacca
gatcaacgaaaccagattgagttgggaagaaaagacgacagcacagtccacagactcttc
cttgaccccactggctcacatctgctcatcggcttgagcacaagagagtgcctgtatctc
aacaggaacacacagaaggtgcgtagtctgtcccgctggagaggccacctcattgagtgc
gtgggctggaacaagcagtttggcaacgagaccaacacaggacccatcctggttggaacc
agtcagggcgtcatctttgaagctgagatctctgcaactgaggccagcctgttcaacacc
aatccagatcagtacttcagacaggtccactcgctcgaggaggatggtaatcctgcgcca
gtctgctgcctggaggtggagcgcggcctggagaacaaggactacatcattgccaccacc
cgcaaacgcctgttccagttcgtggggaaggaggtggaggggtccgaacagcagtgcttt
agctccatcttcagccagaaccaggaccagctgcccagtttccaggagtttccagccaac
atgggttacagcgagatcacattttacacctcaaagcttcgcaccctcccaaatgcgttc
gcgtggatgatgggaaacggagttctctatggtcaactagactttgtcaggcccaactct
ctgttgagcgacgtgcaggtgtgggagtacacctcggacattgacattagtgccaacaag
cccatctccatcgtgctgacgcagttccactttctgctgctgctccacgatcgcgtcaaa
gccatctgcactctaaacggggaggtggtgtacgaggatgtgttcccagacaaagctggc
actctgaagaagatgatcaaggatccggttggtgggctggtctggatctacaccgagaag
gcagtcttccgctaccacatccagcgtgaggccagggacgtttggcagatgtacatgagc
atgaatcggttcgatctggccaaagagtactgccgcgaccggcccgagtgcatggacatg
gtgctggccaaggaggccgagcactgcttccagaacaagagataccttgatagtgctaaa
tgctatgcgctaacccagaagtattttgaggagatagcgctaaagttcatcgaagccaaa
caagaggaagcactgaaggagttcttactgaagaaactaaacaatctgaaacagaacgag
agaactcagatcaccctgctggtcacctggctctccgagctctacctgaatcagctgggc
cagctggagagcgacggaaacaccatcatcttccaggagacccgcaaagagtttcacgac
ttcctcagcaaccccaagcacaaggagtgcctcttcaacaaccgcagcaccatctacgac
ctgctggccagccacggcaacgtggacgacatggtctacttctcggtcgtcatgcaggac
tacgagagggtgatatcgcactactgccagcacgacgactacagcgccgccctggaggtg
ttgtccaagcactgcgatccgaagctcttctacaagttctcccccgtcctcatgcagcac
attcccaaaaaagtagtcgacgcctgggttcagatgggcaagcggctggacccaaagaag
ctgatcccggctctgatgaactatagccagatgggcagcagccagcagatcaacgaaacc
atccgctacatagaattctgcgtgtacgagatgaccgtgaccgaggaggccatccacaac
tacctgctgtccctctatgccagatacaagccagactctctgttgtggtacctggaacaa
gcgggcacgcaggcctcagagatccactatgacttgaagtacgccctcaggctttgctct
gaacatggatacctgcaggcctgcgtgctggtctacaggataatggagctgtacgaagag
gccgtggaccttgctttacaggtggatgtggacttggctaaatcttgcgcggacctgccc
gaggatgacgaggagcttcagaagaagttgtggctgaagatcgctcggcatgtggtgcag
gaggagaaagatgtgaagaaggcaatgaactgcctgtccagctgcaacctgctcaaaatt
gaagacatcctccctttcttcccagacttcgtgaccattgaccattttaaggaggcaatc
tgtagctctctggaggagtacaatcaacacatcgatgagctgaaacaggaaatggaggag
gccacagagagcgccaaacgcatcagacaagacatccaagaaatgaggaacaaatatggc
gtggtggattcccaggaaaagtgtgcctcttgtgacttcccattactcagcaggcccttt
tatctgttcctgtgcggacacatgttccactccgactgcctctttcaggaagtgaccccc
cagctgtcgtcttataagcagactcgtctggaggagctgcagaggaagttggccgctacc
gctcagacctcaaagtcccggcaccgtccagcccccaaggaagaaggagacacctccagc
atagggaagggcagcgcggtcaccagccgcgagcagatcaaatcagacattgacgacatc
gtggcgtctgaatgcgtctactgcggcgaactgatgatcaagtccatcgacaaacctttt
attgacccggagaagtttgaggaggagaaatccagctggctatga
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