Takifugu rubripes (torafugu): 101070680
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Entry
101070680 CDS
T02386
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101070680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101070680
03036 Chromosome and associated proteins [BR:
tru03036
]
101070680
Enzymes [BR:
tru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101070680
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101070680
mRNA degradation factors
5'-3' decay
Decapping complex
101070680
Chromosome and associated proteins [BR:
tru03036
]
Eukaryotic type
Gene silencing
piRNA pathway
101070680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
101070680
NCBI-ProteinID:
XP_003969279
Ensembl:
ENSTRUG00000012432
UniProt:
A0A3B5KLV8
LinkDB
All DBs
Position
12:9544146..9551559
Genome browser
AA seq
489 aa
AA seq
DB search
MATTRTETVGPVILGLNKQNGQLRGQTKPVSVQSASAAPGKALAPSQTAGGGPQDGGGIK
FGDDWKRNLKLPPKDHRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDHIQAMVLVPTRELALQVSQISIQI
AKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVHIMVMDE
ADKLLSQDFVVLVEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKTIEEQLITDIKPIPGSIDKSLYVAEFHCSSADCEVEEVEE
KPGHQKDSP
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaccagaacagaaactgttggcccagttatcctgggactgaacaagcagaac
ggacaactcagaggacagacgaaaccggtgtcagtccagtctgcttcagcagctccagga
aaggctttggctccatctcagactgcaggtggaggcccccaggatggaggaggcatcaag
tttggagatgactggaaaagaaatctcaagctcccccccaaagaccacagagtcagaacc
tctgatgtgacatctacgaaggggaatgaatttgaagattactgcctcaaaagagaactt
ctcatgggcatatttgagatgggttgggagaaaccatctcccatccaggaggagagcatt
cctatcgccttgtctggaagagacattctggctcgtgcaaagaatggaacaggcaagagt
ggagcctatctcatcccgatgttggagaggatagacttgaaaaaggaccacatacaggca
atggttttggttcccacacgtgagttggctctacaggtcagccagatctccatccaaatc
gctaagcacctgggaggagtcaaagtcatggccactacggggggcacgaacctgcgagat
gacatcatgcgtctggatgagactgtgcacgtggtcatcgctacaccaggaaggatcctg
gacctgattaagaagggggtggcgaaggtggatagagtccacatcatggtgatggatgag
gcggataagcttttatctcaggattttgtggtgctcgttgaggatatcattagcttcctg
gccaagaacagacagatccttctctactctgctaccttcccaatcagcgtgcagaagttc
atggccaagcacctccaaaagccctatgagataaacctgatggaggaactgacgttgaag
ggcatcactcagtactacgcctatgtcacagagaggcagaaggtccactgcctcaatacg
ctcttctccaggcttcagatcaatcagtcaattatcttctgcaactccacccagagggtg
gagctcctggccaagaagatcacccagctgggctactcctgcttctacattcatgccaag
atgatgcaggaatatagaaaccgagtgtttcatgactttagaaatggcctgtgcagaaac
ctggtgtgtaccgatctcttcaccagaggtattgatatccaggcggtcaacgtggtcatt
aattttgatttccccaagaatgctgagacttacctccaccgtattggaagatcagggagg
tttggtcatctggggttggcgatcaatctcatcacatcagaggacagattcaacctgaag
accatcgaggaacagctgatcaccgacatcaagcccattccaggcagcatcgataagagc
ctgtatgtggctgagttccattgctccagcgcagactgtgaggtggaggaagttgaggag
aaaccaggacaccaaaaggacagcccataa
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