KEGG   Takifugu rubripes (torafugu): 101071290
Entry
101071290         CDS       T02386                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
tru  Takifugu rubripes (torafugu)
Pathway
tru03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tru00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101071290 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tru03019]
    101071290 (exosc1)
Messenger RNA biogenesis [BR:tru03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     101071290 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     101071290 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 SH3-C_UBE2O
Other DBs
NCBI-GeneID: 101071290
NCBI-ProteinID: XP_003972075
Ensembl: ENSTRUG00000007706
UniProt: H2T3A0
LinkDB
Position
17:complement(3845889..3848145)
AA seq 193 aa
MSAKVCIPGEKLCSAEDCVLGTGVYLRHGYIHSSLAGYVVRKSEGKELPMISVVRGTELQ
LLPDVGAIVTCKVTSINPRFAKVHILKVGSTSLKDHFKGTIRKEDVRATEKDKVEIYKSF
RPGDIVLAKVMSLGNVESSYLLTTAENELGVVVAHSESGAVMVPISWSEMQCPLTYAKEL
RKVARVQAKHLEA
NT seq 582 nt   +upstreamnt  +downstreamnt
atgtccgcgaaagtttgtataccaggtgaaaagctgtgcagtgctgaagactgtgttctg
ggcacgggggtatacctgaggcatggctacatacactcctcactagcaggctatgtcgtt
aggaaaagtgaggggaaagagctacccatgatctctgtggtgagaggaacagaattacaa
ctgctaccagatgtgggagcaatagtcacctgtaaggtgaccagcatcaacccaagattt
gccaaagtccacatcctaaaggtcgggtccacgtcattgaaggaccacttcaaaggaaca
atcaggaaagaagatgttcgtgcgacagagaaagacaaggtggagatttacaaaagcttc
aggcctggtgacattgtcctggcaaaagttatgtctcttggtaatgtggagtccagctac
ctgttgacaacagcagagaatgaactgggggtggtggtagcacacagtgaatcaggtgca
gtgatggttccaatcagttggagtgagatgcagtgcccactgacttatgctaaagagtta
cgtaaagttgcacgagtgcaggccaaacatctagaggcatga

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