Takifugu rubripes (torafugu): 101071745
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Entry
101071745 CDS
T02386
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03013
Nucleocytoplasmic transport
tru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101071745 (upf3b)
03015 mRNA surveillance pathway
101071745 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101071745 (upf3b)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101071745 (upf3b)
mRNA cycle factors
P-body specific factors
101071745 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
101071745
NCBI-ProteinID:
XP_003970655
Ensembl:
ENSTRUG00000010645
UniProt:
H2TQB5
LinkDB
All DBs
Position
14:10681682..10685072
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AA seq
452 aa
AA seq
DB search
MKEDKENTRPKERKLEIKYDDGEKTEKTKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
EVDYLEFFSNDTSLFPHLFARAYINFRNQEDIVLFRDRFDGYVFIDKRGQEYPAVVEFAP
FQKTAKKRNKKRDAKCGTIIEDPEYKKFLEYYNGDEEKLTSSPEILLEELEAKSKELVAK
KSTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEERRKRKESDKMKKVEK
PLEKDRDQGKEPKIKLLKKPERSEENESENPKEKAKKPEKLTKEDRLAGSGDHKRRQNIE
HKEDRGRKTEEHGRKEFRERDTDQDREREKERRQKEKERLKRRDEERQRRRERLDAENSC
RKQEDDVRKERERNVDKKKCENLGDSSEKAMKSAKEERKDEKRDRLRNKDRPAIQLYQPG
ARNRNRTTGAGPESAARKPDAETEKTSDKADD
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagataaagaaaacacccgaccgaaggagagaaagttggaaataaagtatgat
gatggcgaaaagacagagaagacgaaggaaaagaaagaggccatgacaaagattgtgatc
aggcgattaccaccgagtttgacgaaggaagagctggaggaacagttacagcctctgcca
gaggtggactacttggagtttttctccaacgacaccagccttttccctcacctttttgca
agagcatacattaacttccgaaaccaagaggacatagttctgttcagagatagatttgat
ggatacgtgttcatcgacaagagaggacaggaatatcctgctgttgtggagtttgcacca
tttcaaaagactgccaagaaaagaaataagaaaagggatgcaaaatgtggaacaattatt
gaagatccagaatataaaaagttcctagaatattacaatggagacgaagaaaaattaaca
tcatctccagaaatactgctggaagagctcgaggcaaaatcaaaggaacttgtagctaaa
aaatctactcctctgctggattttctgaagaacaaacagagaatcagggaagagaagaag
gaagagaggcggcggagggagttggaacgcaaacgtctgcgtgatgaggagcggcgaaag
tggagagaggaggagagaaggaagcgaaaagagtctgacaagatgaagaaagttgagaaa
ccgctggagaaggatagagatcagggaaaagagccaaaaattaagctcctgaagaaaccg
gagagaagtgaagagaatgagtctgagaatccaaaggaaaaggccaagaagccagagaag
ctgacgaaagaggatcgattggcagggagcggcgatcacaaacggcggcagaatattgag
cataaggaggaccgaggaaggaaaactgaagaacatggacgaaaggagttcagggagcgc
gacacagatcaggacagagagcgggagaaggagcggcggcagaaagagaaggagcgcctc
aagcgtagggatgaagagcggcagagaaggagagaacggctggacgcagagaactcatgc
aggaagcaagaagatgatgtgagaaaggagagagagcgcaatgtggacaagaagaagtgt
gaaaacctgggagactcctcagaaaaggcgatgaagtctgccaaagaggagagaaaggac
gagaaaagagaccggctgcgaaataaggaccgacctgcaatccagttgtaccaaccaggg
gccaggaaccgcaatcgaaccacgggagcagggcccgagtctgccgccaggaaaccagac
gcagagaccgagaaaacgtctgacaaagcggacgactga
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