Takifugu rubripes (torafugu): 101071918
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Entry
101071918 CDS
T02386
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101071918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tru03009
]
101071918
Ribosome biogenesis [BR:
tru03009
]
Eukaryotic type
Pre-60S particles
RNases
101071918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
KIX_2
Motif
Other DBs
NCBI-GeneID:
101071918
NCBI-ProteinID:
XP_011614292
Ensembl:
ENSTRUG00000025441
LinkDB
All DBs
Position
21:15109733..15117379
Genome browser
AA seq
1121 aa
AA seq
DB search
MFPSSGLFAAVECPFSNNGLCDRPHCLYKHTTSMVGFAGAQNVTPKGDTGTTESDRGKDV
CLQELEWINKEIETMRHQVEQEQKQLSNYQTVQADKGDIASSSHLQQSKTCRSIDTGAYE
SLPCSYLEDRKYVVDSSKPRTDLEYDPLSNFSSDLSSYSSSRREQKLKNTQSLKKARTVG
PCDQKSSTQAQLSRLASPEPLDDWMEDDVLIIDIPPSPQKKEGQGMKCSLAVTDKSQGHE
KKGGEAPSILLDSPLQCSKPELLDIEEIDDKCAETKNLANLHESRERDHPPRGTFGAVLK
KSLEPSGAGLTNLQANLSHVDPPHSAGKMNTPKQNFPSNTSLLYKATAATSDLQCRTRTE
QARDTTHVQSRFCAQTSSVNAQSVLPHCQKPITKNPGPLLSKPGNCAEQVEKNSSSQTQT
KLAESSESNQYLEKDNGRVIVIDSTSEDEINYSDIDVSDSDPMEECYRIFMEENEQKRTE
ELPDARVKNMEVEKVELKVKPQELVGKKRVAHEAKHSEPPAKSRPQPQVLIPLRGPEVSG
FSSQPAVTSNIQQAQERASMLTASAKGAQAFLSFAGQRKPYASNAPPPLPQCPTSQAQLA
PVQNAYVNYIPLGTAVIEVGNNLHLILPDSTFPVTSSSIPVTPVLTPISSMHTSMVTVKQ
SCPFPAIGPLQRTRSTAPILIPALARKSLTPSLAATHSGAAAPVSASAATAVKPPPHKRK
VKHCESTKDKVPHDVRQRYVNMFTEEFLKTTANVNEAFEKALAEERSVYNRSVNKLKYLS
VAVNALKKLKNQCVAAAKDANEGNSQQLRGNVPLNLKRCLGNYDLALYDDMKEYMLSVEK
LIENNYPVRHPEKPGCAILFVDNKKGTGDPLKRICCRCGATYSVSPTGKHTRKEECTYHY
GKGVTKRVPGGVETRYSCCEGVMGTPGCQVYKLHVHDSVSLNGFVSTVPRHPSNTSCPGL
YALDCEMCYTIHGLELSRVTLVNSRLQVIYDTFVSPDNEVIDYNTRFSGISEEDVKGNHT
SLREVQDKLLSFINADTILIGHSLETDLCALKLLHGTVVDTSVVFPHHLGPPYKLTLTSI
TAEHLRRIIQESVCGHDTAEDASACMELMLWKLKEDGKLKK
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgtttccctcgtctgggctttttgctgctgtagaatgtccgttttcgaacaatggactt
tgtgaccgacctcactgtttgtacaaacacaccacatcaatggttggcttcgcaggagcc
caaaatgtcacaccgaaaggtgatactggaacaacagagagtgatcgtggcaaggacgtg
tgcctccaggagctggagtggatcaataaggagatcgaaacgatgaggcaccaggtggag
caggagcaaaagcagttgtcaaactatcagactgtacaggctgataaaggggacattgca
tctagttcacatctgcagcaatcaaaaacatgtagaagtatagacacaggagcttatgag
tccttgccgtgctcctatttggaggacaggaagtatgtggttgacagctcgaaaccgaga
actgatttggagtatgaccccttgtccaacttttcttctgacttgagctcttacagctca
tcccgaagagagcaaaagctgaaaaatacacaaagtttgaaaaaggcaagaaccgtcgga
ccatgtgaccagaagagttcaactcaggcccagctctccagattggcatcaccggagccc
ctggatgactggatggaagatgatgtcttgatcattgatattcctccttcacctcagaaa
aaggaagggcaaggaatgaaatgcagtcttgctgttactgacaaatcacaaggacatgaa
aaaaaagggggtgaagcgccatccattttacttgattctccactccagtgttcaaaacct
gaattgttggacattgaagaaattgatgataaatgtgctgaaaccaaaaatctggctaat
cttcatgagagcagagaacgtgatcacccccccagaggcacttttggagctgtcttgaag
aaaagccttgaaccttcaggggccggcctcacaaatctacaggctaatttgtcacatgtt
gatccaccccacagcgctggtaaaatgaatacaccaaaacaaaatttcccatcaaataca
tcactcctttataaagctacagctgctacctcagacttgcaatgcaggactcgcaccgaa
caggctagggatacaacgcatgttcagagcagattttgtgctcagacatcttcagtaaat
gcacaatcagtgctgccacattgtcagaaacccataaccaaaaatcctggacccctactg
agcaaacctggaaattgtgcagagcaggtggaaaaaaattcaagcagtcagactcagaca
aaattggctgagtcatctgaatccaatcagtatttggagaaggataatggccgagtcatt
gtcattgattctacctctgaggatgaaataaactattcggacattgatgtttcggatagt
gacccaatggaggagtgctacaggatcttcatggaggaaaacgagcagaaacgaactgaa
gaactgcctgatgcacgtgtcaaaaatatggaggtggagaaagttgagttgaaggtcaaa
ccccaggaattggttggaaagaagagggtagctcatgaggccaaacattcagagcccccg
gccaaaagtagaccccagcctcaggtgctgatccccctacgtgggccggaggtgtcggga
ttttcctcccagcctgctgtcacctccaacatccagcaggcacaggagagagcatccatg
ctgactgcttcagcaaaaggtgctcaggcatttctttcttttgctggtcagaggaaacca
tatgccagcaatgcaccacctcctctcccgcaatgtccaacctctcaagcacagcttgca
ccagtacaaaatgcgtatgtgaactacatacctctgggaaccgctgtcatcgaagtgggc
aacaatttacatttaatcctcccagatagcacctttccagtcacctccagttccatccca
gttactccggtgctaactccaatcagttccatgcacacaagcatggtgaccgtgaaacaa
tcttgcccatttcctgccattggtcctctgcaaagaacccgctcaacagcgcccatactt
attcctgcactggcacgtaaatcattgacccccagcttggccgcaacacattcaggtgct
gcggctcccgtttctgcatccgctgcaacggctgtgaagccaccaccacataaacggaag
gtgaagcattgcgagtcgactaaggacaaggtgccgcatgatgtccggcagcgctacgtc
aacatgttcaccgaggagttcctcaaaaccacagctaatgttaatgaagcctttgagaag
gcgctggccgaagagaggtccgtgtacaatcgcagcgtgaacaagctgaaatatctgagc
gttgctgtgaatgctctaaagaaactaaagaatcaatgtgtagctgctgctaaagatgca
aatgaaggaaacagccaacaactccgaggcaacgttccgctgaacctgaagaggtgcctt
ggaaactatgatctggcactgtatgacgacatgaaggaatatatgttgtctgtggagaag
ctgattgagaacaattatcccgtccggcatccagagaaacctggctgtgccattcttttt
gttgacaataaaaaaggcactggagaccctctcaagaggatctgctgtcgatgtggggct
acttactctgtgagtccaacaggcaaacacacccgtaaggaggagtgtacttatcactat
ggtaaaggagtaacaaaaagagttccaggtggggtggagactcgctacagctgctgcgag
ggcgtcatgggaacacctggctgtcaggtatataagttgcacgtccatgattctgtcagc
ctcaatgggtttgtgtcaaccgtccccagacatccctcaaatacaagttgccccggcctc
tacgctttagattgcgaaatgtgctacaccattcatggtctggaactatccagagtgacg
ctggtcaactcaagattgcaggtcatctatgacacctttgtcagtcctgataatgaggtc
attgactacaacacaaggttctcaggcatcagtgaggaggatgtgaagggcaaccacacc
tccctccgggaggtgcaggacaagctactgagcttcattaatgctgacaccattctgatt
ggacacagcttggaaacagacctctgtgctctgaagttgctccatgggacagtggtggac
acatcagtggtctttccccaccatctgggccccccttacaagctgaccctcaccagcatc
actgctgagcacctcaggaggatcatccaagagagtgtttgtggtcatgacactgcagaa
gacgcctctgcctgcatggagcttatgttgtggaagctcaaagaagatggaaaactgaaa
aaatga
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