Takifugu rubripes (torafugu): 101071943
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Entry
101071943 CDS
T02386
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04510
Focal adhesion
tru04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101071943
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101071943
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tru00536
]
101071943
Glycosaminoglycan binding proteins [BR:
tru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101071943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
101071943
NCBI-ProteinID:
XP_029689732
LinkDB
All DBs
Position
3:14111672..14126397
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AA seq
1487 aa
AA seq
DB search
MFSFLDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGQPYNDKDVWKPEPCRICVC
DSGSVLCDEIICEEVKECADPIITSGECCPICPDDVTALIDVTGAKGQKGEPGDIVDVVG
PKGPPGPMGPSGEQGPRGEVGLKGDKGNPGPRGRDGEPGTPGNPGPAGPPGPPGLGGNFA
AQMSAGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGEAGEPGPAGPMG
PRGPAGPPGKAGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ESGAAGAKGETGSAGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGNRGAEGQQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKG
STGGPGIAGAPGFPGPRGPPGPQGATGSLGPKGQSGDPGLPGLKGETGPKGELGPLGPQG
APGPAGEEGKRGARGEPGAAGPIGPPGERGAPGNRGFPGQDGLAGGKGAPGDRGVPGAAG
PKGTGGDPGRPGESGLPGARGLTGRPGDAGPQGKVGASGPAGDDGRPGPPGPLGARGQPG
VMGFPGPKGANGEPGKPGEKGLLGRQGLRGLPGKDGETGSAGPPGPAGPVGERGEQGQPG
PSGFQGLPGPSGSPGEAGKPGDQGLPGEGGVPGAAGPRGERGFPGERGGAGPQGLQGPRG
LPGTAGSDGPKGAIGPAGAAGPQGPPGLQGMPGERGAGGIPGAKGDRGDLGEKGPEGAPG
KDGSRGLTGPIGPPGPSGPNGAKGESGPVGPNGAPGSRGTPGDRGEIGPPGPAGFAGPPG
ADGQPGVKGELGESGQKGDSGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGSTGFPG
SAGRVGPPGPNGNPGAAGPAGPAGKDGPKGTRGDAGPPGRHGDAGLRGPPGQQGEKGEPG
EDGPPGSEGPSGPQGLGGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSAGDRGPPG
PVGPPGLTGPAGDPGREGAPGSDGPPGRDGASGVKGERGNSGPAGAPGAPGAPGAPGSVG
PLGKQGDRGEAGAQGPAGPPGLAGARGMAGPQGPRGDKGEAGEAGERGQKGHRGFTGLQG
LPGPPGPAGDSGASGPAGPGGPKGPPGPAGVSGKDGSNGQPGPIGPPGPRGRSGETGPSG
PPGNTGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNNQIETLRSPDGTQKNPARTCRDLKLCHPKWESGNYWVDPNLGCTADAMKVFCNMETG
ETCVYPSIAKIPKKNWWSSKSKDRKHVWFGETMNGGFHFSYAQDGPAAAAAGVQLNFLRL
LSAEASQNLTYHCKNSVAYMDQSTGNLKKAMLLQGSNEVEIRAEGNSRFTYSVLEDGCKK
HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttctggactcaaggactgttctgctactcgtagcatcccaagttgtttta
ctatccgtggtcaggtgtcaggaagaagacgaccaggaggcaggcggctgcatccaggac
gggcagccctacaatgataaggatgtgtggaagcccgagccgtgtcgtatctgtgtgtgc
gacagtgggtcggttctgtgtgatgagataatctgcgaggaggtcaaagagtgtgccgac
cctatcatcacatctggagagtgctgccccatctgccccgatgatgtcactgccctcatt
gacgtgactggcgcaaagggccagaaaggagaaccaggagacattgtagatgttgtagga
ccaaaaggaccaccgggccccatgggcccctcgggtgagcagggaccacgaggagaagtc
ggtcttaagggtgataagggaaatcctggacctagaggaagagatggtgagcccggcacc
cccggaaaccccggacctgctggcccacctggaccacccggccttggaggaaactttgct
gctcagatgtccgcggggttcgatgagaaatctggaggggctcagatgggagtgatgcag
ggccccatgggtcctatgggtcctcgtggtccgcctggaccttctggagctcctgggcca
cagggtttccagggtgcccctggtgaggctggagagcctggtccagctggaccaatggga
cctcgtggaccagccggacctcctgggaaagctggaagtgatggggaggccggtaaaccc
ggaaaagctggcgaacgtggacctgcagggcctcagggagctcgtggattccctggaact
cccggacttcctggaatcaaaggacacagaggtcaccctggtttggatggcgctaaggga
gaatctggtgctgcaggagccaaaggtgagactggctctgctggggagaacggtgctcct
ggaccgatgggccctcgtggtctgcctggtgagagggggcgtcctggagcagcgggagct
gcaggtgctcgaggaaatgatggcttacccggtcctgctggcccaccggggcctgtgggt
ccagctggagctcccggcttcccaggatctccaggagcaaagggagaagccggacctact
ggaaaccgcggagctgaaggacaacagggaccccgcggagaggctggcactccgggatct
cctggacctgctggagcatcgggcaaccctggtactgatggtattcctggagcaaaagga
tctactggtggtcctggtattgctggtgcccctggattccctggacctcgtggaccacct
ggaccacagggagctactggttctctggggccaaaaggacaatctggtgaccctggtctc
cccggcctcaaaggggagacaggacccaagggagagcttggcccacttggtccacaaggt
gcccctggccctgctggtgaagaaggcaagagaggtgctcgaggagaacctggagctgcc
ggacccattggacctcccggagagagaggagctcctggtaaccgtggtttcccgggtcag
gatgggcttgctggtggaaagggtgcccctggtgaccgtggtgttcctggcgctgctggg
cctaaaggtactggtggggacccgggacgccctggagaatccggcctccctggagccaga
ggtctcactggtcgtcctggagatgcaggtcctcagggcaaagttggagcctctggtcct
gccggtgatgacggtcgcccgggtccacctggtcctctgggagcccgcggacagccagga
gtgatgggattccctggacccaaaggagccaacggtgaacccggaaagcccggagagaaa
ggtcttctgggccgtcagggtctgagaggtctgcctggaaaagatggagagactggttct
gctggacctcctggtcctgctggacctgttggagagagaggagagcaaggtcagcccggg
ccttctggattccagggtttgcccggcccatctggctcccctggagaggctggaaaacct
ggagaccagggtctccctggcgagggaggagtacctggtgctgccggaccccgaggtgaa
cgtggcttccctggtgagagaggtggtgctggacctcagggtcttcagggacctcgtgga
cttcctggaacagctggaagcgatggaccaaagggagccattggaccagctggagctgct
ggaccccagggacccccaggcctgcagggtatgcctggagaaagaggagccggaggtatc
ccaggagccaagggagacagaggtgatttgggagagaaaggacccgagggagcccctgga
aaggacggttctagaggtttaactggtcctattggccctccgggtccatctggacccaat
ggtgcaaagggtgaatctggacccgttggtcccaacggtgcccccggttctcgcggcact
cctggtgaccgtggggagatcggacctcctggtcctgctgggtttgctggacctcctggt
gcagatggtcagcctggtgtgaagggagagctcggtgagtctggacagaagggagatagt
ggatctcctggacctcagggaccatctggtgctcccgggcctgtgggacctactggtgtt
tctggacctaaaggagcacgtggtgctcagggagctcctggttctactggtttccctggt
tctgctggcagagtggggcctcctggccctaatggtaaccccggtgctgcgggtcctgcc
ggtcctgccggcaaagacggaccaaagggtactcgtggagatgcgggacccccaggaaga
cacggagacgctggactccgtggacctccgggccaacagggagagaaaggagagcctggt
gaagatgggccgcctggttctgaaggtccctcaggtcctcagggtctgggtggatctcgt
ggtattgttggtttgccaggtcagcgtggagagaggggcttccctggacttcctggacct
tccggagaacctggtaaacaaggtgcatcaggttctgctggtgaccgtggacctcctggg
cctgtaggaccccctgggctgactggacctgctggagatcctggcagagagggtgctccc
gggtcagacggacctccaggcagagacggagcttctggagtcaaaggagagcgaggcaac
agtggccccgccggtgcccctggagctcccggtgcccctggcgctcctgggtctgtcgga
cccctcggaaagcagggagacagaggagaggctggagctcaaggacctgctggaccccct
ggacttgctggtgctcgaggaatggctggaccacaaggaccccgtggagataagggagag
gctggtgaggccggagagaggggacagaagggccaccgtggattcactggactgcagggg
cttcctggacctcctggtcccgctggagattctggagcttctggacctgctggacctggc
ggacctaagggaccacctggaccagctggggtttctggcaaagatggatctaatggacag
cctggtcccattggcccccctggacctcgtggacgttccggagaaactggtccttctggt
cctcctggtaacactggacccccaggtcctcctggcccccccggccccggaattgacata
tctgcctttgctggtctgggtcaaactgagaagtcccccgatccactcagatacatgagg
gctgatgaggcttccagctctcttaggcagcacgacgtggaggtcgactccactctgaag
tccctcaacaaccagatcgagaccttgcgtagccccgacggaacccagaagaaccccgct
cgcacctgcagagacctgaaactgtgtcaccccaaatgggagagtggtaactactgggtc
gatcctaatcttggctgcaccgctgatgccatgaaggtcttctgcaacatggaaaccgga
gagacctgcgtctaccccagcatcgccaaaataccaaagaagaactggtggagcagcaag
agcaaggaccgcaaacacgtctggttcggagagaccatgaacggtggattccacttcagc
tacgcccaggacggccccgccgccgccgccgccggagtccagctgaacttcttgaggctt
ctgtccgctgaggcgtcccagaacctgacctaccactgcaagaacagcgtcgcctacatg
gaccagagcactggcaacctgaagaaggcgatgctgctgcagggctccaatgaggtggag
atccgggcagagggcaacagccgattcacatacagcgtgttggaggatggctgcaagaaa
cacacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
cccatcgtggacattgctcctatggacatcggaggagcggatcaggaatttggagtggat
gtaggcgcagtctgctttttgtaa
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integrated database retrieval system
