Takifugu rubripes (torafugu): 101074412
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Entry
101074412 CDS
T02386
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03030
DNA replication
tru03420
Nucleotide excision repair
tru03430
Mismatch repair
tru03440
Homologous recombination
tru03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101074412 (rpa1)
03420 Nucleotide excision repair
101074412 (rpa1)
03430 Mismatch repair
101074412 (rpa1)
03440 Homologous recombination
101074412 (rpa1)
03460 Fanconi anemia pathway
101074412 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tru03000
]
101074412 (rpa1)
03032 DNA replication proteins [BR:
tru03032
]
101074412 (rpa1)
03400 DNA repair and recombination proteins [BR:
tru03400
]
101074412 (rpa1)
Transcription factors [BR:
tru03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101074412 (rpa1)
DNA replication proteins [BR:
tru03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101074412 (rpa1)
DNA repair and recombination proteins [BR:
tru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101074412 (rpa1)
MMR (mismatch excision repair)
101074412 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
101074412 (rpa1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF8448
Motif
Other DBs
NCBI-GeneID:
101074412
NCBI-ProteinID:
XP_003968567
Ensembl:
ENSTRUG00000003616
UniProt:
H2S7V3
LinkDB
All DBs
Position
11:complement(11134856..11150101)
Genome browser
AA seq
600 aa
AA seq
DB search
MTMLSEGAIEALSNGSDANDFVLQLTNIRKIEGGNGLPRFRVMMSDGRHTLSSFMLSTQL
NYLIEENTLSLYCICVLKRHVTNILKDGRRVVIILEIDVIKRAEEVAGRIGDPTPYTESQ
TKPQQTTSNHDSRPPLQPQNRNEMNRGFSKDFGKKGPAAMPSTPGGGSKVVPIASLNPYQ
SKWTIRARVTNKSSIRTWSNSRGDGKLFTVELVDESGEIRMTAFNQEVDKFFGLIEAGKV
YYISKCSLKIANKQYTSVKNDYEMTLNGESSIVPCEDSCDVPMVQCDFVSIGDLENKEKD
SIVDVIGVCKKTDEATHFTSKSNREMSKRTLHLIDISGKLVTVTLWGEEAEKFDGSGEPI
IAIKGAKLSDFGGCSLSASFSSTLMVNPDIPEAHKLRGWYDKEGHSMEGQSLTEMRSGGG
GGNTNWKTLTDVKTEHLGHGEKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQQNG
MFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKESNEA
AFDEVFQQANFNSFIFRSRVKLETYNDESRIKATVMEVKPVDHKDYSKRLIMNIRKLVVQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgctctcagagggtgccatcgaggctctatcaaatggcagtgatgcgaacgat
ttcgtccttcagctgactaatattcgtaagatcgagggaggtaatggtctacctcgtttt
cgggtcatgatgagtgatggacgacacacactgtcctccttcatgctctcgactcagcta
aactacttgatagaggaaaacaccctgtccctgtactgcatctgcgtactgaagaggcat
gtgacaaatatactgaaggatggaaggcgggtggtaattattttggaaattgacgtcatc
aagcgtgccgaagaggtagctggaaggataggtgatcctactccatacactgagagtcaa
actaaaccacagcagacaacatccaaccatgactcccgtcctcctttgcagccccagaac
agaaatgaaatgaacagaggtttcagcaaagactttgggaagaagggcccagccgcgatg
cccagcactccaggggggggatccaaggttgtacccatcgccagcctcaatccctaccag
tccaagtggacaatccgcgcccgcgtcaccaacaagagcagcatccgcacatggagcaac
tcccgcggtgacggcaagctcttcaccgtggagctggtggacgagagcggagagatccgc
atgactgcgttcaaccaagaggtggacaagttcttcggccttattgaagctggcaaggtt
tactacatctccaagtgctccctgaagatcgccaacaagcagtacacgtcagtgaagaac
gactacgagatgacgctaaacggcgagtccagcattgtcccctgcgaggacagctgtgac
gtccccatggtgcagtgcgacttcgtctccatcggcgacctggagaacaaagagaaagac
tccattgttgatgtgatcggagtgtgcaagaaaacggatgaagccacccacttcacctcc
aagtccaaccgagagatgtccaagaggaccctccacctgatagacatatctgggaagctg
gtgacggtcacgctgtggggagaggaggcagaaaagtttgatggttctggagagccgatc
atagccattaagggggcgaagctgtctgactttgggggctgttccctgtctgcatccttc
agtagcaccctgatggtcaaccctgatatcccagaagcccacaagctcagaggatggtat
gacaaagagggtcattccatggaggggcagtctttgacggagatgagaagcggtggcgga
ggtggaaacaccaactggaagacgctaaccgatgtcaaaacggagcatttgggccacgga
gagaaggccgactactacacctgcatcgcaacgatcgtgtacctgcgcaaggagaactgc
ctttaccaggcctgccccagccaggactgcaacaaaaaagtggtggaccaacagaacgga
atgttccgctgtgagaagtgcgacaaagagttccccaacttcaagtaccgcctcatcctc
tctgccaacattgcagattacggagacaaccagtgggtgacttgcttccaggagagcgcc
gaggcaatcctgggccagaacgcagcttacctggggcagctgaaggagtcgaacgaagct
gccttcgatgaagtcttccaacaggccaacttcaactcgtttatcttccgcagcagagtg
aagttggaaacttataatgatgagtcacggatcaaagccacggtgatggaggtgaagcca
gtcgatcataaagactacagcaagaggttgatcatgaacataaggaaactggtggtccag
taa
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