Takifugu rubripes (torafugu): 101074808
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Entry
101074808 CDS
T02386
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101074808 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101074808 (hbs1l)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101074808 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
UBA_RAD5A
Motif
Other DBs
NCBI-GeneID:
101074808
NCBI-ProteinID:
XP_011610306
Ensembl:
ENSTRUG00000016128
LinkDB
All DBs
Position
16:7785737..7805495
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AA seq
688 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDMYGQSVDDDYCISPATANQFIYSRRERQAPKEEPLEEEEY
EDEPMPMSPTVSHNLLNPLDQAKLYSCLDHMRTVLGDAIPDSVLTQAAMRCGFDPQRALD
IVLSEDSATTPGSRCTSKDAGRVAYEPAPLPQRPKPETAAERASSKMECDVVPKVARMTV
SGKKQTMGFDVPSAGEHGSGRGGSPETPAVAPASEAAPKQQETPSKGANGEDSSTVPTPG
RSGKARQAINIKAELEKRQGTKTLLNLVVIGHVDAGKSTLMGHLLYLLGHVNKRTMHKYE
QESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETSSKVVTLMDAPGHRDFIPNMI
TGAAQADVALLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNWQQD
RFQDITSKLGSFLKQAGFKESDVSYIPSSGLSGENLTTRSSVPQLTSWYSGPSLLEQIDA
FKPPQRSTDKPFRLCVSDVFKDQGSGFCVTGKVEAGYVQTGDRILVLPPNETCTVKGITL
HDEPLDWAAAGDHVSLTVTGMDIIKMNVGCMFCDPKEPIKVCTRFRARILLFNIEVPVTQ
GFPVLLHYQTVSEPATIRKLISVLHKSSGEVLKKKPKCLTKGMNAIVEIQTQRPVSLELY
KDYKELGRFMLRYGGSTIAAGVVTEIKG
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacagaaatgtccgtggttacaactatgatgaagactttgaagatgatgac
atgtatggacagtctgtggatgatgactactgtatatcaccagcaacagcaaatcagttc
atctactcgcgtagagagaggcaagcaccaaaagaggagcctttagaagaggaagaatat
gaagatgagccgatgcccatgtcccccactgtcagtcacaatcttcttaacccgcttgat
caagccaagctctattcctgtctggatcacatgcggaccgtgctgggagatgccatccca
gactctgtgctgacccaggcagccatgagatgtgggttcgacccgcagcgagcgctcgac
atcgtcctgtcggaagacagcgccacgaccccgggctccagatgtaccagcaaagatgca
ggaagggttgcttatgagccagcaccgctgccacaacgacctaaaccagagacggcggct
gagagagcttccagtaaaatggagtgtgacgtggtccccaaagtggcccgcatgaccgtc
tcgggcaagaagcagaccatgggcttcgacgttccgagcgcaggggagcacgggagcggc
cgcggggggagccccgagacccccgctgtggccccggcctccgaggctgcacccaaacag
caggagaccccgtccaaaggggcaaacggggaggactcctccacggttcccacaccgggc
cgctccgggaaggcccggcaggccatcaacatcaaggctgagctggagaagaggcagggc
accaaaactctgttgaatttggtcgttataggtcacgtggatgcaggtaaaagcaccctg
atgggccacctcctctacctgctgggccacgtcaacaagcgcaccatgcacaagtacgag
caggagtcgaagaaggcggggaaggcctccttcgcctacgcttgggtcttggatgaaacc
ggggaggaacgggacaggggtgtgactatggacgtaggcatgaccaagtttgagaccagc
tctaaagttgtgacactgatggatgctccaggacacagagatttcatcccaaacatgatc
acaggagctgcacaggctgatgtggcgctgctggtggtggacgccagccggggggaattc
gaggccggttttgaggcgggcggccagaccagagagcacgctctgctggtgcgctcgctc
ggcgtcacgcagctggctgtggccgtcaacaagatggaccaggtgaactggcaacaagat
cgattccaagacatcacctccaaactgggcagtttcctcaagcaggccgggttcaaggag
tccgacgtgtcctacatcccctccagtggcctctcaggagagaatctgaccaccaggagc
tcagtgccacagctcacctcctggtattctggtcccagcctgctggagcagatcgatgcc
tttaagcctcctcagaggtctacagacaagcccttcagactctgtgtctcagatgtgttc
aaagaccagggctcaggcttctgtgtaactgggaaggttgaggctggttatgttcagact
ggtgacaggatactggtgttgcctcccaatgaaacatgcaccgtcaaaggtataaccctg
catgatgaacctctggactgggcggcagcaggagaccatgttagcctgacggtcaccggc
atggacatcatcaagatgaatgtgggctgcatgttctgcgatcccaaggagcccattaaa
gtctgcacaagattcagagccaggatccttctcttcaatatagaggttcctgtcacacag
ggcttccctgtgttgttgcattaccagaccgtcagcgagcccgccaccatcaggaaactc
atcagtgttttacacaaaagcagtggtgaagtcctcaagaagaaaccaaagtgtttgacc
aagggcatgaacgctatcgtggagattcagacacagaggcctgtttcattagagctgtac
aaggactacaaagaacttgggcgcttcatgctgcgatatgggggctccaccatcgctgcg
ggggttgtcaccgagatcaaaggatga
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