Takifugu rubripes (torafugu): 101076288
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Entry
101076288 CDS
T02386
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101076288 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tru03021
]
101076288 (pcf11)
03019 Messenger RNA biogenesis [BR:
tru03019
]
101076288 (pcf11)
Transcription machinery [BR:
tru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101076288 (pcf11)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101076288 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
101076288
NCBI-ProteinID:
XP_011609384
Ensembl:
ENSTRUG00000004419
LinkDB
All DBs
Position
15:complement(5712634..5722684)
Genome browser
AA seq
1552 aa
AA seq
DB search
MDCLTINALGVDQAGVGFPGSSSSKMDDNAARADACREYQSSLEDLTFNSKPHINMLTIL
AEENINFAKDIVAIIEAQISKAPPTEKLPLLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDEVFPLKKLYALDVRVNSADTAWPIKPLPPTVNASIHVNPK
FLKQSEEVPPPQPSSSPQPPAPATEPAPQSTSNTNQYNLTQEQLIRQQLLAKQNQLLAKQ
KQLLELQQKKIELELEQTKAQLAGGFTLPSSAPVPATPSMTSKPTTQAAPVVRPWIPPQT
EPKSSTRDPRLNRPGPPTAPQPKEQSAERKADVVTTGNAAVTPEKCSQPDKTRTQKKEVL
EEKSKSKSPPPMSKTISPKNKQSETEAQKSADPKKDPRLKKRSHDKMDNKDDEAKDKKRS
AEKKERQEDTRGGEPQRSGKGRVMNGTVNKHEHSESTEKADLKSGGNARTHARKRPRSRS
RSRSPGTSPKRKERRSPKSRVRSSSLSPSPSRKANKARRLRPEEMGHGKPGREDRLSVKK
NQLEARRLKRPTEERHSETRDNHSPRSHDGGGKENKDAPHRWRSGWEENKHLKPSEDSHT
KLGLPRHKQYSTPNRPPTSRTPKHRLNVDPNLQIPEILNAASKKDLLRRASKRLESGEIS
QEDFLNVAHKIKTFFQYQEEKQQQQHSGNWDDSGVFSKKQSLLPTPSSSEPHPLETMDAA
ELSYYEHKSKLKKTQVTHRPNVGEWEGEQNSGESKELAPSEKADDQNLGPSLHRYNRVPL
DASDERRSKENEDQRVPPVPMIEEYNHGKEFPKLKSLPGLRFRRRADPRDSNEREWNSPL
MERQRYDEDQKSGYDAPRKYGPSADSRVSDPRRPDQSSGPVVHRKCPSPGSLDSTGPRFE
RERLSPLQQREPSEMSPIPRFESPNSEHSDDGPLNLDGPPSHTHPPPPKSTHAGPSPGGQ
LASLRLHRDSPGHTPPYDGGHPTSLYDGPVHRGPSRANPPGWYEGGGPEHYDDVTQFEGP
HPQGPSRLDGGRPLQRFDGHGPMRVGDGMGRFDCQPHPHGPNRFDGQGPGPARYERYNNM
GPGPGSGQNQRPMRFETPLNQMGPMRFEGPGPRRFDGPMQAGPRFDMPHQGGAPVYDPVH
SQQVPGRFPPQHNLQPPIRPIVPPMYENPMGPQQNLNMGQHFPEPVDPQFPVGQMAYSAQ
APAFNQQGSASFYNPSAPGLSMQQPVNLLGSLNQSFPSQSAVPFGHQTPQIAPTENHFGQ
MDVNELLSKLISNGIIKAAQPEATLTSGTASGTAPAGSPLAEEDDEDDPELLDNDVPDLR
SFTIEAMKLRYESVVTKLYSGTQCGLCSMRFSSRQPDLYGDHLDWHYRQNHNGKVPSKKV
THRRWYYGLRDWIEFEEIADLEERAKSLFFEKENEVEVQKNQAAAKEKEVQCVKATKDQV
GESCEICQEQFETYWVEEEEDWFLKNAIRVDDKIFHPSCFEDYKNSYIDVTPSPNKLLTD
HPLSSFIKTEDGVEETACSVSATVKQEVESELPDIKAEEVLTVTLQSEQSDV
NT seq
4659 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgacaatcaacgcattgggtgttgatcaggctggtgtaggtttcccgggg
tcgagcagctcaaagatggacgacaacgcagcgagggcggatgcctgccgagagtatcag
tcctcgttggaagacttgacattcaatagcaagcctcacatcaacatgctgaccattttg
gccgaggaaaacatcaacttcgccaaggatatcgtcgcaattattgaagcgcaaataagc
aaggccccacctactgagaagctaccacttttgtacttagtggattccatagtgaagaat
gttggaggagaataccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggttgatgaaaacactagaaagagccttttcaagttgcgttcgacgtgggat
gaagtatttcctctgaagaaactatatgcactggatgtccgggtcaactctgctgacaca
gcctggcccatcaagcctcttccacccacggtcaatgccagcatccatgtcaaccccaag
tttttaaaacagtctgaggaagttcctcctccacagccttcatcctccccacagcctcca
gcaccagctacagaacccgctccacagtcaacctcaaacacaaaccagtataatttgact
caggagcaactgatcagacagcagcttctggctaaacagaatcagcttcttgccaaacag
aaacaactgttggaacttcagcagaaaaagattgagctggaacttgagcagacaaaagcc
cagttggctggaggatttacattgccatcatcagctccagttcccgctactcccagcatg
acatccaagcctaccacccaagctgcgccagtggtccggccctggatcccccctcagaca
gaacccaagtcgtccacccgagacccccgcttaaaccgccctggccctccaactgcacct
cagcccaaagagcagtctgcggagagaaaagcagatgtggtcacaactggaaatgctgct
gtgactcctgagaagtgcagtcagccagacaagaccaggacacaaaagaaagaggtgctt
gaggagaagtctaaatccaagtctccacctccaatgagcaaaacgatctcgcctaaaaac
aagcaatcagagactgaagcccagaagtcagccgaccccaagaaagatccaaggctgaag
aaacgttcacatgacaagatggacaacaaagacgatgaggcaaaggacaagaaaagaagt
gctgaaaagaaggagcggcaggaggatactcggggaggtgagcctcagagatctggcaaa
gggagggttatgaatggcacagtgaacaaacatgagcacagtgagtcgacagagaaggct
gatttgaagtctggtgggaatgctcggacacatgctaggaaacgtccccgttcacggtcc
aggtcacgctcgcctggcacctcccctaaaagaaaggaaaggcgctcgccgaagagccga
gtcaggagcagctctttgtctccttcaccctctcgcaaagcaaacaaggctagacggctc
cgtccagaggaaatgggtcatggcaaacctggacgagaggacaggctttcagtcaaaaag
aaccaattggaggccagaaggttgaagagaccaacggaggagcggcactctgaaaccaga
gacaaccactctccacgtagccatgatggaggaggcaaggagaacaaggatgctcctcat
cgctggaggagtggctgggaggagaacaagcatctcaagccatcagaagactcccacacg
aagcttggactgccacgacacaaacagtacagcactccaaatcgacccccaacttctaga
acaccaaagcaccgacttaatgtggatcccaacctgcagattcctgaaatcctcaacgct
gcttccaagaaagacctgctgagaagggccagcaaacgtctggagagtggtgaaatttcc
caggaggatttccttaatgttgcacacaagatcaaaaccttcttccagtaccaggaagag
aaacaacagcagcagcactctgggaattgggatgactctggagttttctcgaagaagcag
tcactgttacccacaccctcctcttctgagccccaccctctggaaaccatggatgccgct
gaactgtcctactacgaacacaagtccaagctgaaaaaaacccaggtcacccaccgaccc
aatgtgggggagtgggagggtgagcagaattctggagagagcaaggagttggcaccgagt
gagaaagcagatgaccagaaccttggaccttcactgcaccgatacaacagggtccctcta
gatgcctcagatgagagacggagtaaagagaatgaggaccagcgagtgccacctgttccc
atgattgaggagtacaaccatggtaaggagttccccaaactgaaatcgttgcctggtttg
cgcttcaggcggagagctgacccacgagactccaatgagcgagagtggaactcgccacta
atggagcgccagcggtatgatgaagaccagaagagtggctacgatgctccaagaaagtat
ggcccatctgcagactcccgggtgtctgacccaaggaggcccgaccagtcgtctgggcca
gtggtccacaggaaatgtccaagtccaggtagtctggattcaacaggcccaagatttgag
cgtgagcgcctttcacctcttcaacagagagagccttcagagatgagcccgattccacgc
tttgaaagccccaacagtgagcattctgatgatgggcctctcaatttggatggaccccct
tcgcacactcatcctccacctccaaaatccactcatgcagggccaagccctgggggacaa
ctggcttctctccgtctgcaccgtgattcgccaggacacacgcctccttatgatggaggt
caccccacctcactttatgatggacctgttcacagaggcccgtccagagctaacccccca
ggctggtatgaaggcggaggccctgagcattatgatgatgtgacacagtttgagggccct
catccccaaggtcccagcaggctggatggtggtcgccctcttcagaggtttgatggacat
gggccaatgagagttggagatggaatggggaggtttgactgtcaacctcacccccatggc
ccaaacaggtttgatggacaggggccaggaccagcccgttatgagcgatataacaacatg
ggacctgggcctggctctggacaaaaccagcggccaatgcgcttcgaaacccctctgaat
cagatgggcccaatgcggtttgaaggtcctggtccacggcgctttgatggacctatgcag
gcgggaccaaggttcgatatgccccatcagggtggtgctccagtctatgatcctgtccac
agtcaacaggtcccgggcaggtttcctcctcaacacaacttgcagccacccattaggccc
attgtccccccaatgtatgagaacccaatgggtccacagcagaatttaaacatgggtcag
cattttccagagcctgtagaccctcagttccctgtcggacagatggcatactcggctcag
gcgccggcctttaaccagcagggctctgcttccttctataacccgtctgcccctggcctc
agcatgcagcaacctgtgaaccttctaggaagcctcaaccaatcattcccatctcagagc
gcagtgccttttggacatcagactccacagattgcccccacagaaaaccactttggtcaa
atggatgttaatgagcttttgtccaaacttatttccaacggcatcatcaaagctgcacaa
ccagaggctactctgacgtcgggcactgcttcaggcaccgctcctgctggctcacctctt
gcagaggaggatgatgaggatgacccagagttgttagataacgatgtccctgacctccgt
agctttacaatcgaagcaatgaaactacggtatgaaagtgtggtgaccaagttgtactct
gggacccagtgtggattgtgcagtatgaggttctcatctcgacaacctgacctctatggt
gaccatctggactggcactatcggcagaaccacaacgggaaggtcccaagcaagaaagtc
acccaccgccgctggtattacggactcagggactggatagaatttgaggagatcgctgac
ctggaggagcgagcaaaaagtctgttctttgagaaggagaatgaggttgaggttcagaag
aatcaggctgcagcaaaagagaaggaggtccagtgtgtgaaggccacaaaagaccaggtt
ggagagtcatgtgaaatctgtcaggagcagtttgagacatactgggtggaagaagaggaa
gactggttcctgaaaaacgccatcagggttgacgataagattttccatccctcctgtttc
gaagattataaaaattcgtacatcgatgttacgccatcacccaacaagcttctcactgat
catccactgagctcctttatcaagacagaagatggggtcgaggagacggcgtgctctgtt
agtgccacagtcaaacaggaagtggagtctgagcttccagatataaaagcggaggaggta
ttaacggtcactcttcagtcggagcagagtgacgtgtaa
DBGET
integrated database retrieval system
