Takifugu rubripes (torafugu): 101077615
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Entry
101077615 CDS
T02386
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
tru
Takifugu rubripes (torafugu)
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tru04147
]
101077615 (col18a1)
00535 Proteoglycans [BR:
tru00535
]
101077615 (col18a1)
00536 Glycosaminoglycan binding proteins [BR:
tru00536
]
101077615 (col18a1)
Exosome [BR:
tru04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101077615 (col18a1)
Proteoglycans [BR:
tru00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
101077615 (col18a1)
Glycosaminoglycan binding proteins [BR:
tru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101077615 (col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101077615
NCBI-ProteinID:
XP_011610500
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All DBs
Position
1:25114310..25165018
Genome browser
AA seq
1402 aa
AA seq
DB search
MKIQSQVYILVALGVVSTDAWFWSRTGPTTLAPTPAVESEGSGSPADSGDPPTESSAKLR
AEIIDEGHDFYNVVQTWNETTVAPVLTTPMQLQNENGSEPEPAGISSPISKPEDNGVSLL
QLIGDPPPPEITQVDGPENSPAYVFGPDANTGQLARAHLPSPFYRDFALIFHLKSSSNKG
GVVFSITDASQQIMYVGVKLSDVQGRNQNIILFYTEPGSEESYEAASFPVPSTVDTWTRF
AIAVRDDKVMFYFNCEVDPLVMPIERSPDEMELEAGAGVFIGQAGGADPGKFLGVISELR
VVGDPRVAERYCEEDGDDSDMASGEGSGYEESRPPKPEEKHRWTTTPPPSRPIQQPPLST
KEQVLRETGALGAKGEKGDRGERGEKGGRGPSGPKGDSGFGSSSRGGARGEKGEAGAKGE
KGSAGFGNQGTKGEPGSPGPPGPPGPVGDSVSCKDGSAGNTCLQGPPGADGEPGVPGEDG
KPGPQGASGFPGTPGDQGPKGEKGDTGEGPPGPRGPPGPPGPPGTGLRSTFVDMEGSGYP
DLESVRGPPGPPGIPGPPGPPGTPGASTAATGLGSGAAGPPGKDGAPGQPGSPGLPGTDG
SPGATGPKGEKGNTGELGLPGAVGQKGDQGSPGLPGSPGEAGLAGLPGPRGPMGLPGPPG
PGYRVGFDDMEGSGGGFINRQPGVRGPEGKQGPPGFPGLPGKPGFPGLPGPKGNDGPEGK
DGRPGLDGFPGPQGPKGDRGDKGDRGEAGQDGTGLPGPPGPPGLPGEIIYRSSGNTDGAV
GSVGPQGIPGQPGFPGPAGPKGDRGEPGFPGFGEKGEKGEPGLAIGPDGYRLSLEGLTGL
KGERGIPGPVGPPGPYGPPGLKGEIGMPGRSGRPGINGYKGEKGEPGTGSGFAYPGPPGP
PGPPGPPGPTINQDRFNRYDDTHRNYPAVKGEKGEHGEQGLPGIPGTASNFDIYAYKNEL
KGERGDQGLKGEKGESGGYYDPRFGGVQGPPGTPGLPGPKGDSITGPPGPQGPPGQPGIG
YDGPAGSPGPPGPPGAPGTSTYNYPVSLPGPPGPPGPPGIPGHSSGVTVLRSYDTMIATA
RRQPEGNLIYIIDKADLYLRVRNGLRQVMLGNYSPFFRELENEVAEAQPPPVILYPHSQD
QSHNNGAGHYSQGGPAIQPIDPPPQPPVNNNNYPPHYEPRVPETRHTGHTEGRSGTQTET
QHPVTPQRPPNPPVLQPLGNVETSASALHLIALNAPHTGNMRGIRGADFLCFQQARAIGL
KGTFRAFLSSKLQDLYTIVRRSDRDNFPIVNLKDQVLFRSWESMFGDEASKITENVPIYS
FDGRDILRDSAWPEKMVWHGSSNKGHRQTDQYCETWRAGDRAVTGLASSLKSGYLLQQSA
SSCSGSYVVLCIENAFTSHSKK
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaagatccagagtcaagtttatattttggtggctttgggggtggtctccactgatgct
tggttttggtcccggactggtcccacaactttggccccaacgccggcagtggagtccgaa
ggatctggcagtccagcagatagcggagatccaccaacggagagctctgcaaagctcaga
gcagagataattgatgagggacatgacttctacaacgtcgtgcagacttggaatgagacc
acagtggctcctgtgctgaccactccaatgcagctgcagaatgaaaatggctcagaaccg
gaacctgcggggatttcatcacccattagtaaacctgaggacaacggcgtctccctgctg
cagctgatcggggatcctcctcctcctgagatcacccaagtcgatgggcccgaaaacagc
cccgcttacgtctttggtcctgacgccaacacgggacagttggcccgtgcgcacctcccc
agtccgttctacagagactttgccctcatcttccacctgaagtccagctctaataagggc
ggagtcgtcttctccatcacagacgcctcgcagcagatcatgtacgtcggtgttaaactc
tcagatgtgcagggacgcaaccagaacatcatcctgttttacacggaaccgggctcggag
gagtcgtacgaggcggccagcttccccgtgccgtccacggtggatacctggactcgcttt
gccatcgccgtgagggacgacaaggtaatgttctacttcaactgtgaagtggaccctctg
gtgatgcccatcgagaggtccccggatgagatggagctggaggccggagctggggtcttc
atcggccaagctggaggagccgatcctggaaagttcctgggggtaatcagtgagctgagg
gtggtcggagaccctcgtgttgctgagaggtactgcgaagaggacggcgatgactcggat
atggcttcaggtgaaggaagtgggtatgaggagagcagaccccccaaaccagaggagaaa
cacagatggacgaccacccctccaccttcaagacccattcagcagccaccgttgtccact
aaagagcaagtgctgagagaaacaggagcccttggagccaaaggagaaaagggtgaccga
ggggagagaggagagaaaggaggcagaggtcctagtggacctaagggcgattctggcttt
ggttccagctccaggggcggggcccgtggagaaaagggagaagcaggagcaaagggagaa
aagggcagtgcaggctttggcaaccaggggacaaagggagagccaggctctcctgggcca
cctggccccccaggacctgtaggggattctgtgtcctgcaaagatggatctgctggaaac
acctgtctccagggaccaccgggcgctgatggagagccaggtgttcctggtgaggacgga
aagcctggtcctcaaggagcttcaggatttccaggtaccccaggtgaccaaggacctaaa
ggagagaagggggacactggagagggaccccctggccccagaggacccccaggacctcca
ggacccccaggaacaggattgagatccacctttgtggatatggaaggttcaggataccca
gatttggaatctgtgcggggaccacctggtccacctggcatcccgggcccaccaggtcct
cctggcacacctggtgcctcaacagcagccacaggtttgggttctggagcagctggcccc
ccaggaaaagatggtgcccctggtcagcctggttcacccgggttaccaggtactgatggc
tcaccgggagcgacgggtcccaaaggagaaaaggggaacacaggtgaactgggtcttcca
ggagcagtcggacagaagggagaccaaggaagtcctggattaccaggatctccaggggag
gctggactggctggtttgcctggacctcggggacccatggggctacctggaccacccgga
ccaggctatcgcgtgggttttgacgatatggagggatcaggtggaggcttcatcaacagg
caacctggagtcagaggaccagagggaaaacagggtcctccgggcttccccggacttcca
gggaaacctggcttccctggtctaccagggccaaaaggtaatgatggtcctgaggggaaa
gatggacggccagggttggatggcttccctggacctcagggaccaaagggtgacagaggc
gacaaaggagacaggggtgaagcggggcaggatggcactggactaccgggcccacctggg
ccacctggccttccaggagaaatcatctaccggtcatcaggcaacactgacggtgctgtc
ggcagcgtggggcctcagggaatacctggacaacctggattccccgggccagcagggcca
aaaggtgacaggggagaacctggctttccaggctttggagagaagggtgagaaaggtgag
ccaggcttagcgatcggacccgatggatatcgtctgtctctggagggactaacaggtctg
aagggagagaggggaatacctggaccagttggacctcctggcccatatggccctcctgga
ttaaagggtgaaattggaatgccaggcagatctggtcgtcctggtataaatggatacaag
ggtgagaaaggagagcctgggactggttctggatttgcctacccagggccaccaggacca
cctggaccaccaggccctccaggaccaaccatcaaccaagatcgtttcaatcgctacgat
gacacacacagaaattatccagcagtcaaaggggagaaaggagagcatggtgaacaaggc
cttccaggaatccctggaacagcctctaattttgatatctatgcatacaagaatgaactg
aagggagagcgtggagatcaaggcctgaaaggagaaaagggtgagtctgggggatattat
gacccacgttttggtggagtacaaggacctcctggcacaccaggcctgcctggccccaaa
ggggactcaataactggccctcctggaccccaggggccaccaggacagccaggcattggt
tacgatggacctgcaggttctccaggaccacccggaccacctggagctcctggaactagc
acatacaattaccctgtcagtctgcctgggccacctggtcctcccggtccacctggaatt
ccaggtcactcctctggggttacagttttaaggtcatatgacactatgattgcgactgcc
agacgtcagccagaaggaaatctaatctacatcatcgacaaagcagacctgtacttgaga
gtacgcaatggactacggcaagtcatgcttggaaactacagtcccttctttagagaactg
gagaacgaggtggcagaggcccagcctccacctgtcatcctgtatccccattcccaagac
cagtcccacaacaatggcgctggccattactcccagggtggacctgctatacaacccatt
gatcctccaccacaaccgcctgtaaacaacaacaactaccctccccactatgagcccaga
gtccctgaaacgagacacacgggccacacagaaggacgatcaggcactcagacagagacc
caacaccccgtgaccccacagcgaccacccaacccgcccgtactgcagcctctcgggaat
gttgaaacatcagcatcagcactacatctcatcgccttaaatgccccacacacgggtaac
atgcgaggaatccgcggggcagatttcctctgcttccaacaggcccgagccatcggactc
aagggcaccttcagagcattcctctcctccaagcttcaagacctctacacgatcgtccga
aggtcagacagggacaacttccccatcgtgaacctcaaggaccaagtgttgttcagaagc
tgggaatcgatgtttggtgacgaagctagcaaaattacggagaatgtacccatctactcc
ttcgatggcagagatattctcagggatagtgcatggccagagaaaatggtctggcatgga
tcgagcaacaaaggccaccggcaaacagaccagtactgtgaaacatggcgagcgggagat
cgcgctgtgactggtctggcatcatcacttaagagcggctacctcctgcagcagtccgcc
agcagctgttctggctcctacgttgttctctgcatagagaacgccttcacgtcacactcc
aaaaaataa
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