KEGG   Takifugu rubripes (torafugu): 101078563
Entry
101078563         CDS       T02386                                 
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
tru  Takifugu rubripes (torafugu)
Pathway
tru03018  RNA degradation
tru03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tru00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101078563 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101078563 (lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tru03019]
    101078563 (lsm4)
   03041 Spliceosome [BR:tru03041]
    101078563 (lsm4)
Messenger RNA biogenesis [BR:tru03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101078563 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101078563 (lsm4)
Spliceosome [BR:tru03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    101078563 (lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 101078563
NCBI-ProteinID: XP_011613354
Ensembl: ENSTRUG00000021737
UniProt: A0A3B5K599
LinkDB
Position
20:complement(12726615..12728523)
AA seq 143 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEDVLSKGRGRGGAQQNKQQGKGRGGAGRGVFGSRGRGLTG
PGRGQQQMQDKKSGKPQGMKNQH
NT seq 432 nt   +upstreamnt  +downstreamnt
atgcttccactatctcttctaaagacagcccaaaatcatcctatgctggtggagcttaaa
aatggagaaacgtataacggccacttggtcagttgtgacaactggatgaacataaaccta
cgagaagttatctgcacatcaagggatggagacaaattctggagaatgcccgaatgctac
atcagaggaagcaccatcaagtatctgcgaatccccgatgagatcattgacatggtaaag
gaagatgttctgtcaaagggcagaggacgtggaggtgcccagcagaacaagcagcagggc
aaaggaagaggaggagctggcagaggtgtttttggcagccgtggcagaggattgacaggg
cctggtcgaggccagcagcaaatgcaggataagaagtcaggcaaaccacaaggaatgaag
aaccaacactga

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