Takifugu rubripes (torafugu): 101078603
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Entry
101078603 CDS
T02386
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X9
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
101078603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101078603
03041 Spliceosome [BR:
tru03041
]
101078603
03036 Chromosome and associated proteins [BR:
tru03036
]
101078603
Enzymes [BR:
tru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101078603
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101078603
mRNA cycle factors
Common to processing body (P body) and stress granule
101078603
Spliceosome [BR:
tru03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101078603
Chromosome and associated proteins [BR:
tru03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
101078603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
101078603
NCBI-ProteinID:
XP_003966460
Ensembl:
ENSTRUG00000003862
LinkDB
All DBs
Position
8:2150338..2168532
Genome browser
AA seq
728 aa
AA seq
DB search
MSHVAVEGVHGLEQQLAVLDLTAADGQGGGNRRYIPPHLRNKDASKNEFQTLSSCSAGNA
FVAGRQAGYAIAPAANYGWDGGRNNFVNGYHDNRMPGGNSFNRGPPRMERGRGGVGGGYR
GNRGGAFNPINPAQPMAFAGYEAKDAVGWNTAKDAYNNFGSNRGKSAFFNDRGNANRGRF
EHGGFGGGGGNSRWVEESRDDGDWSKPTPRNERLEHELFSGSNTGINFERYDDIPVEATG
HNCPHHIESFQDLDLGEIIMGNIALSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTA
AFLLPILSQIYTEGPGEALNAAKASGQENGKYGRRKQFPISLILAPTRELALQIYDEARK
FSYRSKVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDE
ADRMLDMGFEPQIRRIVEQDTMPHKGIRHTMMFSATFPKEIQILARDFLEDYIFLAVGRV
GSTSENITQKVVWVEESDKRSFLLDLLSATGKDSLTLVFVETKKGADALEDFLYREGYAC
TSIHGDRSQRDREEALSQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHR
IGRTGRVGNLGLATSFFNDKNGNITKDLLDILGEAKQEIPSWLESLAYEHQHKSSTRGRS
KRFAGGFGARDYRQTAAGGNAGGFAGRGRNQGGHGGARGFGGGGFGNFYTSDGYGGNYSH
SQVDWWGN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaggtgtccacggtctggaacagcagttggctgtactggac
ttgactgcagcagatggacaaggtggaggcaacagaagatacattcctccacatttaaga
aacaaggatgcttccaaaaatgaatttcaaacactatcttcgtgttcagcaggaaatgcc
tttgttgctggccgacaggcgggttacgccattgcacctgcagcaaactatggttgggat
ggaggacgcaacaattttgtaaatggctaccatgataaccgcatgcccggtggtaactcc
tttaaccgtgggccacctcgtatggagcggggacgaggaggagttggaggaggttaccgc
ggtaacaggggtggagcctttaaccccatcaacccagcacagccaatggcctttgctggc
tatgaagcgaaagatgccgtaggctggaacactgctaaggatgcctataataactttggg
agcaacaggggaaaatcagcattctttaatgatagaggcaacgcaaacagagggaggttt
gagcacggaggatttggcggcggcggaggaaacagccgctgggttgaggagtccagagat
gatggtgactggtccaaaccaacacctcgtaatgaacgccttgaacatgagttgttttct
ggcagtaatactgggattaattttgagagatatgatgacattcccgttgaggccacagga
cacaactgccctcaccacattgaaagtttccaagatcttgatctgggtgagattatcatg
ggaaacattgctttaagtcggtacacaagaccgactcctgtccagaagtatgccatcccc
attatcaagtcaaagcgagacctcatggcctgtgcacagacaggctctgggaagactgca
gcattcctgttgccaattctcagccaaatctacaccgaaggaccaggagaagctcttaat
gcagccaaggcctctggacaggaaaatggaaagtacggccgtcgcaagcagttcccgatt
tctctgatcctggctccaaccagagaactggctctgcaaatatacgatgaagccaggaag
ttttcctacagatccaaagtgcgaccttgtgttgtctatggtggagcagacattggtcag
cagatcagagatctggagagaggctgccacctgctggtggcaactccaggaagactggta
gacatgatggagaggggaaagatcgggctggactactgcaactacctggtcttagatgaa
gctgatcgcatgctggatatgggctttgaaccccagataagacgtattgtggaacaggac
accatgccacataaaggcattcgacacaccatgatgttcagtgctacctttcctaaagag
attcagatcctggccagggacttcctggaggactatatcttcctggcagtgggccgagtt
ggctccacttctgagaatattactcagaaggtggtgtgggtggaggagagtgacaagagg
tcttttctgctggacctgctcagtgctacaggaaaggactcgttgactctggtttttgtg
gagacaaagaaaggtgctgatgccttggaggacttcctgtatcgagaggggtatgcttgc
accagtatccatggtgaccgctcccagagagatcgtgaggaggccctcagtcaatttaga
tcaggaaaatgtcccattctggtggccacagcggtagctgctcgaggtctggacatctcc
aacgtgaagcatgttatcaactttgacctgcccagtgacatagaggagtatgtccaccgt
attggacgtacaggacgtgtcgggaatctgggactggcaacatctttctttaatgataaa
aatgggaacatcactaaggacctactggacatccttggtgaggccaaacaagaaattccg
tcttggctcgagagcctggcctatgaacaccagcataagagcagcaccagggggcgctct
aagaggtttgctggtggctttggagctcgtgattatcgccagactgctgcaggaggcaac
gcgggaggctttgcaggacgtggtcgcaaccagggaggacatggaggggcgcgtggcttt
ggaggaggtggttttggtaacttctacaccagtgatggctatggaggcaactactcacac
tctcaagttgactggtggggcaattag
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