Takifugu rubripes (torafugu): 101078974
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Entry
101078974 CDS
T02386
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X2
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101078974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tru04131
]
101078974
Membrane trafficking [BR:
tru04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101078974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
WD40_CDC20-Fz
TPR_VPS8_2
Clathrin
zf-RING_UBOX
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_11
Beta-prop_WDR5
zf-RING_2
PHD_4
Beta-prop_EML_2
zf-C3HC4
zf-rbx1
zf-C3H2C3
EIF3I
WDR55
PHD
Motif
Other DBs
NCBI-GeneID:
101078974
NCBI-ProteinID:
XP_011601141
LinkDB
All DBs
Position
4:2380871..2398829
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AA seq
1390 aa
AA seq
DB search
MSDSPDARSLLSASSQLNLMEVDAIDDKEFDIPQVDTPPTLESILNELEDEEEPFVLEDT
CVLNTDNMDAHSCDTSSLASSDSGDPVHHKRRRRTVDMKPTLHGSVLRHSLLKGISAQII
SAADKVDAGLPTAITMSGVIVVGTSHGLALVFDTNQALRLCLGNKATGADYGAVSALSIN
HDCSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGGSV
FELAFRRVMGMRSCDSRCLFSGSKGEVCSVEPLHAPPEARDHPITHYSLLAMASLTKILV
IGLKPSLKVWITFPYSKSDPSSVPQLAWQFVPVQRTVNPVLAFSKGDTVHFLLVKKEETG
TIHVIKQRQLHVSCDIISLCWINSRTLVLVDSHEKLQVVDRPSQEVLETLDLEQVQLVYN
SRHFKSLATGGNVSQALALVGEKACYQSVSSYAGQIIYLGTKSAHIMTLRAWRERIDCLL
KLEHFPEALSLAWSFHEGTAKAVVGLFGDPVKRKGVVADKMVEMIFQFADFALKKCPEQG
KIQVLEQHFHEVVPVLVDYCLLLKRLDLLFNQLYPQLVENMVAKGIFLESLESYIIADRL
GHLPTPVMKDLLMHYQSSCMMESLERCIVHLDITSLDIQQVVQVCWENQLYDAVIYVFNR
GMNDYTTPMEKLFAVIVPPVREGKSLTDVEVVMGNKLLVYISCCLAGRAYPLGDIPEDLV
VQVKHQVFEFLIRRHSADSSEEEEVFPFIRTLLHFDTREFLNVLAMTFEDFKNDKQALEY
QQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCCPDD
DSRHTERQQVLLELLQVGSVVQFNEERLLMLAEKAKFYQICEFLYEKQHLYDRIIDCYLR
DPLRKGEVFSYIHNLLSMPGYSPEEKQSVMDKVRQHMHELVIFDPNKSADLVTFHFAEEV
QQIISELQDDRLLFRFLSCLLEQQDGQHSGPVLLLQPELHELQLDLLSRFDPKHILNFLQ
TSQHYRLEEAVQITQKYHHNKATAFLLEKRGDVEGAFAVLLETLKENLSRVTAERAGDDE
EETLTNVKDSLSDIISLCHQSSQSLNQQQREVLWFPLLETMMAAQKQVKGRDSKHTFEVL
KELTMKVLNRMSSFISLPAIIQRILQDPVYGKGKLAEIQSLILGMLDTFNYEQTLLETTT
SLLNHDLHWSLAHLRAAVTRGIHPRQDCCNICLQQYKRRQDAAAADEIIVFSCGHLYHLQ
CLQQKDSGWGFTSDVQQQWSCYKCSSSKGGRAASADSRGRSLSLAQTCVTSLQHDGATEA
DGKKGFVEVTLDHQQEQSWDQLRCLYRGPSRLSILSELSHSNEKTGLLIGSQTGTDHFQL
KLAPPPLFEE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattctccagacgccagaagcttgctgtctgcctcctcgcagcttaatttgatg
gaggtggacgcgattgatgataaagagtttgatattccccaagtggacacacctcctaca
ctggagagtattcttaatgagctggaagatgaagaggagccatttgttctggaggacacg
tgtgtgctgaacactgataacatggatgctcactcctgtgacacttcctctctggccagt
tcggacagtggagatcctgtacaccacaaaaggaggaggagaacagtggacatgaaacca
acacttcatggctctgttctgcgccatagcttgctaaaaggcatctctgcacagatcatc
tctgctgctgacaaagtggatgccggactcccaactgctataacaatgtcaggtgtgatt
gttgtggggacgtctcacggtctggctctggtctttgataccaaccaggctctgcgcctc
tgcctggggaacaaagcaaccggggcagattacggagctgtatctgccctcagcatcaac
catgactgctcacgtctgctctgtgggtttgccaagggacagattacaatgtgggatctc
gccaatggaaaactcctgagaactattactgatgcacaccccccagggacggctatactt
cacgtgaagtttacagacgatccaactcttgcagtttgcaatgacagtggaggatccgtg
tttgagctggcgttcaggagagtgatggggatgcgctcctgtgactctcgatgtctcttc
agcggttccaaaggggaggtgtgctctgttgaacccctgcatgctcctccagaggccaga
gatcaccccatcacccactattctctcctggccatggcctctctcactaagattctggtt
attggcctgaagccctcacttaaagtctggataacgttcccctacagtaaatctgatccg
tccagtgttccccagctggcctggcagtttgttccagtccagagaaccgtgaaccccgtc
ctggccttttccaaaggagatacagttcacttcctcttggtaaaaaaggaggaaacgggc
accatccatgtaatcaaacaaaggcagctccatgtcagctgtgacatcatcagcctctgt
tggatcaacagccgcacgctggtcttggtggacagccatgaaaaactgcaggttgtggac
cgacccagtcaggaggttttggagaccctcgacttggaacaggtgcagctggtttataac
agcagacatttcaaatcgctggccactggagggaatgtctcccaggctctggctctcgtt
ggagaaaaggcctgttaccagtcggtctccagctacgcgggacagattatatatctgggc
accaagtctgctcacatcatgactctcagggcctggagggagcggatcgactgtctgctg
aagctggaacattttcccgaggccctgtctctggcctggtcgttccacgaggggacagct
aaggctgtggtcggtctgtttggagacccggtgaaaagaaaaggagtcgttgctgacaag
atggtagagatgattttccagtttgcagactttgccctaaagaagtgtccagaacaagga
aagatccaagtgctggaacaacacttccatgaagttgttccagtcctggttgattactgt
ttgctgctgaagaggcttgacctgctgtttaaccagctgtaccctcaactggtggagaac
atggtggctaaaggcatcttcttggaatccctggagtcctacattatcgcagaccgcctt
ggtcaccttcccacaccggtcatgaaagaccttctcatgcattaccaaagcagctgtatg
atggagagcctggagagatgcatcgtccatctggacatcaccagcctggacatacagcag
gtggttcaggtgtgttgggagaaccaactctacgatgcggtgatctacgttttcaatcgt
ggcatgaacgactacactacacctatggaaaaactctttgcagtaattgtcccaccagta
agggaggggaagagtcttacagatgtggaagtggtgatgggaaacaaactcctggtgtat
atcagctgctgtctggcaggacgggcatatccattaggagacatccctgaagaccttgtg
gtccaggtaaagcatcaggtgtttgaatttttgatccgtcgccattcagcggactcctca
gaggaggaagaagtgttcccgtttattcgcactctgctccactttgacactcgagagttc
ctcaacgtcctcgccatgacattcgaagacttcaagaacgacaaacaggcccttgaatac
cagcagaggatcgtggacatcttactgcaggtgatggtggacaacccagactttactccg
tcccaggtgggaggactcttcacctttttagcgcgacagttggccaaaccagacaacaca
cttttcgtaaacaggaagctcttcgatcaggtcctggagtttctgtgctgcccagatgac
gactcccgtcacactgagaggcagcaggttctgttggagctgctgcaggttgggagcgtg
gtccagtttaatgaagagaggcttctgatgctggccgagaaagccaaattctaccagata
tgtgaatttctttatgagaagcaacatctctacgacaggatcattgactgttacctgaga
gaccccctcagaaagggagaggtcttcagctacatccacaatctgctgtccatgcctggt
tacagcccggaggagaagcagtcagtcatggataaagttcggcagcatatgcatgagctg
gtgatctttgaccccaataaatcagctgatttagtgacgtttcactttgctgaagaggtc
cagcaaataatctctgagcttcaggatgatcggctgctcttcaggttcctcagctgtctc
ttggagcaacaggacggccaacattcgggccccgtcctactgctgcaacctgaactccac
gagcttcagctggacctgctcagccgttttgaccccaaacacattttgaatttcctccag
acctcccaacactatagactagaagaggcagtacagataacacagaagtatcaccacaac
aaagctacagcctttcttttggagaagaggggcgatgtcgaaggagcttttgctgtgctg
ttggagacgctaaaggaaaacctgagtcgtgtcacagctgagagagcaggagatgatgaa
gaggaaaccctgacaaatgtcaaggattctctaagtgacatcatctccttgtgtcaccag
agctctcagagccttaaccagcagcaaagagaggtcctgtggtttccactgttggagacc
atgatggctgcacaaaaacaagtgaagggacgggacagtaaacacacatttgaggtgctg
aaggagctgacgatgaaggtcctcaaccgtatgagcagcttcatttctcttcccgccatc
atccagcggatactccaggatccagtctacgggaaaggaaagctggcagaaatccagagc
cttattttgggcatgctcgacactttcaactatgagcagacgttacttgaaacaaccacc
agtttgttgaaccatgacctccactggtccctggcgcacttgcgcgcagcggtcactagg
gggatccacccacgacaggactgctgcaacatctgcctgcagcagtacaagaggaggcag
gatgcagcagcagcagacgagatcatcgtcttcagctgtgggcatctgtaccacctccag
tgtctgcagcagaaggactctggctggggttttacgtcagatgttcagcagcaatggagc
tgctacaaatgttcctccagcaaaggaggccgagcggcgtcggctgattcgagaggccgc
agcttgtccctggcgcagacctgcgttacatcattacaacacgatggggcaacagaagct
gacgggaagaaggggtttgtcgaagtcaccttagaccatcagcaagaacagtcctgggat
cagctacgctgcctttacagaggaccgtccaggctgtccatcctgtccgaactttcacac
agtaacgagaagacgggccttctgatcggcagccagacggggacagatcacttccagctg
aaactggcccccccgcctctgttcgaggagtag
DBGET
integrated database retrieval system
