Takifugu rubripes (torafugu): 101079524
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Entry
101079524 CDS
T02386
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101079524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tru03021
]
101079524
03036 Chromosome and associated proteins [BR:
tru03036
]
101079524
Transcription machinery [BR:
tru03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101079524
Chromosome and associated proteins [BR:
tru03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101079524
PBAF complex
101079524
GBAF(ncBAF) complex
101079524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
101079524
NCBI-ProteinID:
XP_011607172
Ensembl:
ENSTRUG00000009434
LinkDB
All DBs
Position
12:1280179..1288018
Genome browser
AA seq
938 aa
AA seq
DB search
MSGCSNFGFPGTGQVNTGTPTQYRKDGSPSAWYWESPDTLTQLEVVRQWIGKHYKKYVLV
DPPSCQALATVSLQLLQFQEDAFGRQAADPALTKLPVHCFLDLRPGGGLCHILGTAHKFK
AEQGWRRFDLQNPSRTERNVEMFGAIERALIQNNCMSQPVVYLDNMLDHELANKLTTIIV
KHQGTVTEDRMQASHHVYPLTASTSDDNWMRPVIQKDKHVLVHWGMHPDSYDCWLPSTDV
EGKVEELPLIEKPWRVHAGWVLDTDVFNEWMNEEDYCVNERSIPVNLRQRINLRDEQDTK
STPIKKRRRSPSPSSESRKKGKKGRKRGQPEEEQEEDLTKDMEDPTPVPNMEEVILPKIV
NLKKDSENTPVRGGIMADLDEQEDDFPGREDEEGRGDLPRLSEGEDSITEQTHHVIIPSY
TSWFNNNSIHSIEKRALPEFFNSKNKSKSPEVYLAYRNFMIDTYRLNPQEYLSSTSCRRN
LTGDVCAIIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLVDTPSGLAPLQHKPL
QVSASQHMLFFPEKSREKPSDCQNFGLRPDIYTKKHPKTKGANAGREWTEQETLLLLEAL
EVYRDDWNKVSEHVGSRAQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQSENPV
MSTVAFLASVVDPRVASSAAKAALEEFSNTQEESVGKISEMSNKPDQTESIEADTTETNS
SSHQGHLRGDGAQVQGQHVKRENAENMLAEDREGRGDGFDHLVQEREQDERVMELELVEG
TVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDRE
KEALEQQRQQLLTERHTFHTEQLKQAEMKVRQQREQQGQPGFTPQQSALPDPSGQAVSNR
MMPGGGTAQPMATRHPGAPNGMYPDGAAPGQAPASSHS
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggtgctcaaattttgggtttcctggaacaggccaagtcaacaccggaactccc
acacagtatagaaaagacggtagtccgtcagcttggtactgggagagtccagatacttta
acacagctggaagtggtgcgacagtggattggaaagcactacaaaaagtatgtcctggtg
gatcccccatcatgccaggctctcgccacagtgtccctgcagctccttcaattccaagag
gatgcctttggcagacaagctgccgatcctgcgctcacaaaactgcctgtacactgtttt
ctggacttgcggccaggaggtggactctgtcacatcctcggaacagcccacaagttcaag
gccgaacaaggatggcgaagatttgacctgcaaaatccatccagaactgaaaggaatgtt
gagatgtttggtgcaattgaacgagcgctgatccagaacaactgtatgtcacaacctgtt
gtatatctggataatatgctggatcatgagctggctaacaaacttaccaccatcatcgtt
aagcaccagggtacagtcacagaggacaggatgcaagccagccatcatgtttacccctta
actgcttctacaagtgacgacaattggatgcgtccagtcatccagaaagacaaacacgtt
ttggtacactggggcatgcaccctgacagttatgactgctggttgccttcaactgacgtt
gaaggaaaagttgaagagctcccacttatagaaaagccatggcgggtccatgctggctgg
gttttggacacagatgtcttcaatgagtggatgaacgaggaagactattgtgtaaatgag
aggagtattccggtcaaccttcgccagcgcattaacctccgagatgagcaggacaccaag
tcgacccccatcaaaaagagaagacgctctccctctccctcctctgaaagtaggaagaaa
ggaaagaaggggagaaagcgtggacaaccggaggaagagcaagaagaggacctgactaaa
gatatggaggatcctacccctgttccaaacatggaggaggttatattacccaaaattgtt
aacttaaagaaagacagtgaaaatactccagtcagaggagggatcatggctgacctggat
gaacaggaggatgatttcccaggaagggaagatgaggaggggagaggagatttgcctcgc
ttgtcagagggagaagacagcatcacagaacaaacccatcatgtcataataccaagttac
acatcttggtttaataacaatagcattcactctatagagaaacgtgcattgcctgaattc
tttaatagcaagaacaagtccaaatctccagaagtctacctggcatatcgtaactttatg
atcgacacgtaccggctgaacccacaggaatatctcagctcaacatcgtgcagacgtaac
cttaccggggacgtgtgcgctataattagggttcatgcgtttctggagcagtggggtttg
attaattaccaagtggatgcagagagcagacctctccccatgggaccaccacccacccct
cacttcaacgtcctagttgacacaccaagtggcctggccccccttcaacacaaacccttg
caggtgtctgcctcacagcacatgctatttttccctgaaaagagcagagaaaaaccttct
gattgccagaactttggcctgcgccctgatatctacaccaaaaaacacccaaagactaaa
ggagcgaatgctggacgagaatggacggagcaggaaacactattactactagaagcttta
gaggtttacagagatgactggaacaaagtgtccgagcacgtgggctcaagagcacaagac
gaatgcatcctgcactttctccgccttccaatagaagacccttacctagaagactcctcg
gcctccctcggaccactggcataccaacctgtgccttttagccaatcagaaaatcctgtc
atgagcactgtggctttcctcgcatcagttgtagaccctcgggtggcatcatcggcagct
aaggccgcattagaggagttttcaaacacacaagaagaatcggtgggtaagatttctgaa
atgtccaacaagccagaccagacagaatccatagaggcagatacaaccgagaccaactcc
tcctcccaccagggacatttgaggggagatggcgctcaagtccaggggcaacatgtcaaa
agggaaaatgctgaaaatatgcttgcagaggatagggaaggaaggggagatggttttgac
cacctggtgcaggagagggagcaagatgagagagtcatggagctagagctggtggaagga
actgttgccacggcagccgcagccgctctggcctctgcagccacaaaggctaagcatttg
gcggcagtagaagagaggaagatcaaatctcttgtggctttgctggtggaaacacagatg
aagaagctggagataaagctgcgccactttgaggagctggagacaatcatggaccgtgaa
aaagaggcgctcgagcagcagcggcagcagctcctgacagaaagacacacattccacacg
gagcagctgaaacaggcagagatgaaggtccgccagcaaagggagcagcaggggcagcca
ggatttacaccacaacagtcagctcttcctgatccttcaggccaggccgtatctaaccgg
atgatgcctggaggaggaactgcccagccgatggccacaaggcacccaggggctcccaat
ggcatgtaccctgacggggcagcaccaggacaggcgccggcctccagtcacagctga
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