Takifugu rubripes (torafugu): 101079727
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Entry
101079727 CDS
T02386
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101079727 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tru03041
]
101079727 (prpf40a)
Spliceosome [BR:
tru03041
]
Complex A
U1 snRNP components
U1 related factors
101079727 (prpf40a)
Complex B
101079727 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
Motif
Other DBs
NCBI-GeneID:
101079727
NCBI-ProteinID:
XP_011608773
Ensembl:
ENSTRUG00000007825
LinkDB
All DBs
Position
1:20590602..20600199
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AA seq
879 aa
AA seq
DB search
MSSSETNNGPAQAPPYPGVPPSAIPPPFMGPPGIPPHFPPMGLPPMAQRPPSMTPMPPGI
LPPGIMPPMGTPPLGQIPGMIPPMMPAMMLPPRISAASVQPTGPPGVDTPTAAPGTTSTT
NGSPPEDQPKKKSVWTEHKSMDGKTYYYNTETKQSTWEKPDDLKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEALIKAEENGTTETAAPAAITAPAVQAESTASV
VAVMEAEPTVAVSEEVVSQATATLTAEVKAADAPVAAAESPAATEVPASIEAPKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKLIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFAEVEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREGFQKFLDELHD
HGQLHSMSSWMEMYPSLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKSFPVEINTNFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPETAWESVRDRFLKESAFEDITLEAERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEDYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKTKKRRHKSASPDSDNEKKGRERDGKREKDLEKEKENDKSRGKSRSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcagagactaataatggccccgcccaagcgccaccttatccaggtgtaccg
ccctcagcaataccgcccccgtttatgggaccaccgggaataccgcctcattttcctccc
atgggattgcctccaatggcacaacgaccccccagcatgacacctatgccccctggtatt
cttccgcctgggattatgccaccaatggggacgccaccgttgggccagattccaggcatg
atcccacctatgatgccagcaatgatgctgccacctcgaatatcagctgcatctgtgcag
ccaacaggaccgcctggtgttgataccccaacagctgcgcctggaacaactagcaccaca
aatggatctccgccagaggaccagccaaagaagaagtctgtgtggacagaacacaaatca
atggatggaaagacatattattacaacacagagactaaacagtctacgtgggagaaacca
gatgaccttaagtctcctgcggagcaaatgctttctaaatgcccctggaaagagtacaag
tcggacacagggaagccttattattacaattcgcagactaaggaatccagatggaccaaa
cccaaagagttggaggacctggaagccttgatcaaagcagaagagaatgggacgactgag
acggcggctcctgcagccatcacggctcctgcagtgcaagcagaaagtacagcctctgtg
gtggcagtaatggaggctgaacctacagtggcagtctcagaggaagtcgtgtcccaggcg
accgccactctcacagctgaggtcaaggctgcagatgcacctgtggctgccgcagagagc
ccagccgccacagaggtcccggccagtatcgaagccccaaaggaggaacggccagaactt
cagaagaaaacctacaaatggaacacaaaggaagaggccaagcaagcctttaaggagcta
ctgaaggagaagggtgtgtcgtcaaactcgtcttgggaacaagcaatgaagctgatcatc
aacgatcctcgctacagtgcccttcccaaactgagtgagaagaaacaggccttcaatgcc
tacaaagtacagacagagaaggaagagaaagaggaggccagaatcaaatacaaggagtcc
aaagagacatttcagaggttcttggagaaccatgagaagatgacgtctaccaccagatac
aagaaagcggaacaaatgtttgctgaagttgaggtgtggagttgtgtccctgagagagac
agactggagatttatgaagatgtgctgttttaccttgctaagaaagagaaggaacaagcc
aagcagctcagaaagaggaactgggaggctctcaaaaacatactggataacatggctaat
gtaacataccggaccacctggtctgaggcccagcagtacctgttggacaaccctaccttt
gcagaggatgaagagctgcagaatatggacaaagaagatgccctcatttgttttgaggag
cacatcagggctctggagaaggaggaggaggaggagaaacaaaagactcttctgagggag
agaagacgccaacgcaaaaacagagaaggtttccagaaatttctggatgagctccatgat
catgggcagcttcactccatgtcatcctggatggaaatgtacccaagcctgagctcagac
atccgctttgccaacatgctgggacagccaggctctacacccctggatctgtttaaattt
tatgtggaagacctgaaggcccgctaccatgatgaaaagaggatcattaaggatattctc
aaagacaaaagttttccagttgaaatcaacacaaattttgaggactttggatcagtcatc
agctcagacaagcgtgccaccacactggatgctggaaacattaaactggccttcaacagt
ctgctggagaaggcagaggcgagagagagagagcgagagaaagaagaggccaggaagatg
aagaggaaagaagcagcgtttaaaaacatgctgaagcaggccacaccaccactggagcca
gagaccgcttgggagtctgtaagagatagatttttgaaagaatctgcctttgaagacata
accctggaggcagagaggaagaggatattcaaggacttcatgcatgtcttagagcatgaa
tgccagcatcaccattccaagacaaagaagcactcaaagaagtccaaaaagcaccacagg
aaacgatcccgctcccgatcgggctcagagtcggaggacgaagactatcacaagaagaaa
aagagatctcagtccaagtctccttcggaacgctcctccagtggagaatctgagagaagc
tataaaaagtccaagaagcacaagaagaagaccaagaagaggcgtcacaagtctgcgtct
ccggactctgacaatgagaagaaaggaagagagcgtgacggaaagcgcgagaaggaccta
gagaaagagaaagagaacgacaagtctcgggggaagtctcgctcagactcgaaacagaaa
tctccgaagagaaaagcagccaaagaggagggcggctgggatacgtcaggcagcgagctg
agtgaaggggagctggaaaagaggaggagaactttgctggaacaactggatgctccgtga
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