Takifugu rubripes (torafugu): 101080168
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Entry
101080168 CDS
T02386
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X4
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04140
Autophagy - animal
tru04148
Efferocytosis
tru05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
101080168 (vps39)
04148 Efferocytosis
101080168 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
101080168 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tru04131
]
101080168 (vps39)
Membrane trafficking [BR:
tru04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
101080168 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
WD40_like
Motif
Other DBs
NCBI-GeneID:
101080168
NCBI-ProteinID:
XP_003978544
Ensembl:
ENSTRUG00000005149
UniProt:
H2SIV2
LinkDB
All DBs
Position
2:14755283..14763816
Genome browser
AA seq
876 aa
AA seq
DB search
MHDAYEPVPILEKLPIQIDCLAAWDDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSIK
NFSKKIQQLHVVSQYKILVSLLENNIQVHDLLTFQQITGLPKAKGATLFACDLQQTSQGE
ERLRMCVAVKKKLQLYYWKDREFYELEGDLAAPDIPKSMAWCENSICVGFKRDYYLIRID
GRGSIKELFPTGKQLEPLVAPLADGKVIVVQEDQTVVLNEEGACTQKCPLTWTDIPIAME
HQPPYIIAVLSRCVEIRTFEPRMLVQCVELQRPKFIASAGPNIVYVASNHFVWRLVPVSI
SSQIEQLLQDKQFELALQLAKMKDDSDGDKKQQINHIQNLYGFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRRQLHYPNPLPALSGAELEKAHLALIDYLTQKRSRLVKHL
NDSDPSTTSPLMEGTPTIKSQRKLLQIIDTTLLQCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHRKALQVLLDQSTKANSPLKGHERTVQYLQRLGTENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVENLPRDKVLHFLMEGFKELTIPYLEHIVSAWD
DESPEFHNVLIQLYLERVQSLMKQYLNSLPEGVAAVAAGKEEGDLGEFRTKLLSFLDTSS
SYQPAKLISDFPFDGLLEERALLLGRMGKHEQALLIYVHILKATRMAEDYCQRHYDSSLE
GNKDVYLSLLRMYLSTPDAHCLGPIKLQLSEPQANLKEALQVLKLHHSKLNTTKALNLLP
ANVQIKEIQVFLESVLEEKAQRKRCNQVVKSLLQAEFLRVQEERIFHQQVKCVITDEKTC
RVCKKKIGSSAFARYPNGVVVHYFCCKDRSACPAEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcctatgaaccggtgcctattttggaaaagttgcctattcagattgactgt
cttgcggcctgggatgactggctgcttgtggggacgaagcctggacatctgctcctctac
aggatcaagaaggatgcaggcaccaaccggtttgaagtgacgctggagaaatcgattaag
aacttttcaaaaaagattcaacagcttcacgtcgtctcacagtacaaaatactcgttagt
ctactggagaacaacatccaggtgcacgacctcctcaccttccagcagatcactgggctg
cctaaagcgaaaggagccacactcttcgcctgtgatctgcagcaaaccagccaaggagag
gaaagactgagaatgtgtgtggccgtgaaaaagaaactgcagctttattactggaaggat
agagagttctatgaactggagggggatctggcagctccggatattccgaagtctatggcg
tggtgtgaaaactccatatgtgttggtttcaaacgagactattacctcattcggattgat
ggtcgtggttccatcaaggaactcttccccactgggaagcagctggagcccctggttgcc
ccactggctgatgggaaggtgattgttgttcaggaagaccaaaccgtggtgctgaatgaa
gaaggagcctgcacccagaagtgccccctcacctggacagacattcccatcgcaatggag
caccagcctccgtacatcatcgctgtgctttctcgctgcgtggagatccgcaccttcgag
cccaggatgctggtgcagtgtgtggagctgcagaggccgaagttcatcgcttcggcaggg
ccaaatattgtgtacgttgccagcaaccactttgtttggcgcctggttcccgtgtcgata
tccagccaaatcgagcagcttcttcaggacaagcagtttgagctggctcttcagctggcg
aagatgaaggatgactcggatggagacaagaagcagcagattaatcacatccagaatctg
tacggcttcaacctcttttgccagaagagatttgatgactcaatgcaggtgtttgccaag
cttggcacagatccgactcatgtgatcggcctgtatccagacctgcttccatcagactac
cgccgccagctgcactatcccaaccccctgccagcgctgtccggtgcagagctggagaag
gcccacctggctctcatagactacctgacacagaaacgcagccgccttgtgaagcatttg
aacgactctgacccctccacgacgtctcccctcatggaaggcactccgaccatcaaaagc
cagagaaagcttctgcagatcatcgataccacgctgctgcagtgttacctgcacaccaat
gtggccctggtgtcccccctcctccgcctggaaaataaccactgccacatcgaggagagc
gagtacgtcctgaagaaggcccacaagtacagcgagctcatcatcctctatgagaagaag
ggtctgcatcgaaaagctctgcaggtgctcctggatcagtccaccaaggccaactctccg
ctgaagggtcacgagcgcactgtgcagtacctccagagactgggaactgagaatttggga
atcatctttgagttttctccctgggtgctgaagatctgtcctgaggacggcctgaagatc
ttcactgaggacctgacagaagtggagaacctacccagagacaaggtgctccacttcctg
atggagggctttaaggagctcaccatcccatatttagagcacattgtctctgcgtgggac
gatgagagcccagagttccacaacgtgctgatccagctctacctagagagggttcagagc
ctcatgaaacagtacctgaactccctgccagaaggagtggcagctgttgctgcggggaag
gaggagggagatctgggggagttcaggaccaagctgctgtctttcctggacacgtccagc
agctaccaaccagccaaactcatcagcgacttcccctttgatggcttgctggaggagcgg
gcgttgctcctgggccggatgggtaaacacgagcaggctcttttaatctacgtgcacatc
ctgaaagccacccgcatggctgaggactactgtcagcgacactacgacagttccctggag
ggcaataaagacgtgtatttgtctttgctgcggatgtacctgtccacccccgacgcccac
tgtctggggcccatcaagctgcagctgtcggagccccaggccaacctgaaggaggcgctg
caggtcctgaagctgcaccacagcaagctcaacaccaccaaggccctcaacctgcttcca
gcaaacgttcagatcaaggagatccaggtcttcctggagagcgtcctggaggagaaggcc
cagaggaaacgctgcaaccaggtggtgaagagtctgctgcaggccgagttcctcagggtg
caggaggagcgaatcttccaccagcaggtcaaatgtgtcattacggatgaaaagacctgc
cgagtctgcaaaaagaagataggaagcagtgcgtttgccaggtaccccaacggcgtggtg
gtgcattacttctgctgcaaggatcgcagcgcctgtcccgctgagcagtga
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