Takifugu rubripes (torafugu): 105418327
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Entry
105418327 CDS
T02386
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
tru
Takifugu rubripes (torafugu)
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tru00536
]
105418327 (col13a1)
Glycosaminoglycan binding proteins [BR:
tru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105418327 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105418327
NCBI-ProteinID:
XP_029687849
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MGIPGRMGLKGQAGDKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHNGAK
GDVGERGPKGLPGEPGPKGEKGICGDYTHRGLFVQDLPLKTLAALRSSQALTLKQGEPGA
QGPPGLPGPPGPPGTPGLNGASGSPGKPGEPGKPGKDSRLLPGLKGEPGVPGPKGDRGDI
GPSGPEGPKGEPGLRGHPGSKGEAGTSGTPGIPGKRGYRGEKGQASSSLQGIKGEPGSPG
LPGLMGPKGDKGEHGEKGPAGPTGEAGKMEMNNNENDIRNIHLMGPPGLPGPPGLPGTKG
EVGLPGPPGLDGEKGPRGKAGEQGPAGQPGPEGPRGEVGIMGYPGHKGEKGDLGPSGSPG
LDGPTGEKGAPGAPGSIGLPGVMGPRGEPGEGGRAQMIYGPPGPPGPPGPVGPTGSQGAS
GPKGEPGLGIRGEKGATGQKGDKGDRGHLGLPGAHGLDGRPGPVGLIGPAGMPGPAGPKG
ERGVKGDAGLSGPIGPQGIPGIVGPQGLKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCP
LGDDGLPVPGCWNK
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgggaattcctgggagaatgggcttaaaaggacaagcaggggacaagggagcaccaggt
gagccaggtctgtccatcattggaccaagaggcccccctggacaacctggaaccagagga
ttcccaggctttcctggtccaattgggttggatgggaaaccgggtcacaatggagccaag
ggagacgtgggtgagcgaggccctaaaggactcccaggggaacctggacccaagggggag
aagggaatatgtggagactatacacacaggggcctctttgtgcaggatctgcccctgaaa
accctggctgccttgcgctccagtcaggctctgacgttgaagcagggtgagcctggagca
caaggacccccaggacttccagggccacctggaccccctggaaccccaggtctgaatgga
gctagcggttcacctggtaaacctggtgaaccaggaaagccgggaaaagactcaagactt
ttaccaggactgaagggtgagccaggtgttccgggaccaaagggtgatcgtggggatatc
ggcccatctggtcctgagggcccaaagggagaaccaggcctccgtggccatcctgggtca
aagggagaggctggcacctctgggacccctggcatccccgggaagaggggctacagggga
gagaaaggacaagcaagtagcagcctccaaggaattaaaggagaaccaggttctccagga
ctgccaggcctaatgggcccaaagggtgacaaaggagaacatggagagaagggtccagca
ggtccgactggggaagcaggaaaaatggaaatgaacaacaatgagaatgacattcgtaac
atacatctgatgggtccccctggattaccgggaccccctggactccctggaaccaagggt
gaagtgggtctacctggtcctccaggactagatggagagaagggaccacgtgggaaggca
ggagaacaaggtcctgcaggtcaacctgggccagaaggccccaggggggaagttggcatc
atgggatacccaggacacaaaggagaaaaaggagacctgggtccatctggatcacctggt
ttagatggccctactggtgaaaaaggggctccaggggccccaggctctattggattacct
ggtgtaatgggtcccagaggtgaaccaggagaaggaggaagagcacaaatgatctacggt
cctccagggcccccaggacctccggggccagttggtcctacagggtctcaaggagcatca
gggcccaagggagaaccgggacttggcatcaggggtgagaagggagccacaggtcagaaa
ggtgacaaaggagacagaggtcatcttggacttcctggggctcatgggttagacggcaga
cccggtccagtgggtctaataggaccagcaggtatgccggggccagcaggaccaaaggga
gaaaggggtgtaaaaggagatgctggattatcaggaccaattggacctcaaggcatccct
ggtattgttggaccacaaggactcaaaggcaaccggggagagaggggcaagaaaggcaac
aggggggccaaaggggataagggagaccaaggagcacctggattagatgccccctgtcct
ttgggtgatgacggcttacctgtcccaggatgctggaacaaatga
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