Takifugu rubripes (torafugu): 115249574
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Entry
115249574 CDS
T02386
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115249574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tru04131
]
115249574
Membrane trafficking [BR:
tru04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115249574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_Vps41
Clathrin
zf-RING_UBOX
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_11
zf-RING_2
ANAPC4_WD40
PHD_4
zf-C3HC4
zf-rbx1
Beta-prop_EML
Beta-prop_EML_2
zf-C3H2C3
EIF3I
PHD
Motif
Other DBs
NCBI-GeneID:
115249574
NCBI-ProteinID:
XP_029691140
LinkDB
All DBs
Position
4:2188064..2206020
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AA seq
1392 aa
AA seq
DB search
MSDSPDARSLLSASSQLNLMEVDAIDDKEFDIPQVDTPPTLESILNELEDEEEPFVLEDT
CVLNTDNMDAHSCDTSSLASSDSGDPVHHKRRRRTVDMKPTLHGSVLRHSLLKGISAQII
SAADKVDAGLPTAITMSGVIVVGTSHGLALVFGKDTNQALRLCLGNKATGADYGAVSALS
INHDCSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGG
SVFELAFRRVMGMRSCDSRCLFSGSKGEVCSVEPLHAPPEARDHPITHYSLLAMASLTKI
LVIGLKPSLKVWITFPYSKSDPSSVPQLAWQFVPVQRTVNPVLAFSKGDTVHFLLVKKEE
TGTIHVIKQRQLHVSCDIISLCWINSRTLVLVDSHEKLQVVDRPSQEVLETLDLEQVQLV
YNSRHFKSLATGGNVSQALALVGEKACYQSVSSYAGQIIYLGTKSAHIMTLRAWRERIDC
LLKLEHFPEALSLAWSFHEGTAKAVVGLFGDPVKRKGVVADKMVEMIFQFADFALKKCPE
QGKIQVLEQHFHEVVPVLVDYCLLLKRLDLLFNQLYPQLVENMVAKGIFLESLESYIIAD
RLGHLPTPVMKDLLMHYQSSCMMESLERCIVHLDITSLDIQQVVQVCWENQLYDAVIYVF
NRGMNDYTTPMEKLFAVIVPPVREGKSLTDVEVVMGNKLLVYISCCLAGRAYPLGDIPED
LVVQVKHQVFEFLIRRHSADSSEEEEVFPFIRTLLHFDTREFLNVLAMTFEDFKNDKQAL
EYQQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCCP
DDDSRHTERQQVLLELLQVGSVVQFNEERLLMLAEKAKFYQICEFLYEKQHLYDRIIDCY
LRDPLRKGEVFSYIHNLLSMPGYSPEEKQSVMDKVRQHMHELVIFDPNKSADLVTFHFAE
EVQQIISELQDDRLLFRFLSCLLEQQDGQHSGPVLLLQPELHELQLDLLSRFDPKHILNF
LQTSQHYRLEEAVQITQKYHHNKATAFLLEKRGDVEGAFAVLLETLKENLSRVTAERAGD
DEEETLTNVKDSLSDIISLCHQSSQSLNQQQREVLWFPLLETMMAAQKQVKGRDSKHTFE
VLKELTMKVLNRMSSFISLPAIIQRILQDPVYGKGKLAEIQSLILGMLDTFNYEQTLLET
TTSLLNHDLHWSLAHLRAAVTRGIHPRQDCCNICLQQYKRRQDAAAADEIIVFSCGHLYH
LQCLQQKDSGWGFTSDVQQQWSCYKCSSSKGGRAASADSRGRSLSLAQTCVTSLQHDGAT
EADGKKGFVEVTLDHQQEQSWDQLRCLYRGPSRLSILSELSHSNEKTGLLIGSQTGTDHF
QLKLAPPPLFEE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattctccagacgccagaagcttgctgtctgcctcctcgcagcttaatttgatg
gaggtggacgcgattgatgataaagagtttgatattccccaagtggacacacctcctaca
ctggagagtattcttaatgagctggaagatgaagaggagccatttgttctggaggacacg
tgtgtgctgaacactgataacatggatgctcactcctgtgacacttcctctctggccagt
tcggacagtggagatcctgtacaccacaaaaggaggaggagaacagtggacatgaaacca
acacttcatggctctgttctgcgccatagcttgctaaaaggcatctctgcacagatcatc
tctgctgctgacaaagtggatgccggactcccaactgctataacaatgtcaggtgtgatt
gttgtggggacgtctcacggtctggctctggtctttggaaaagataccaaccaggctctg
cgcctctgcctggggaacaaagcaaccggggcagattacggagctgtatctgccctcagc
atcaaccatgactgctcacgtctgctctgtgggtttgccaagggacagattacaatgtgg
gatctcgccaatggaaaactcctgagaactattactgatgcacaccccccagggacggct
atacttcacgtgaagtttacagacgatccaactcttgcagtttgcaatgacagtggagga
tccgtgtttgagctggcgttcaggagagtgatggggatgcgctcctgtgactctcgatgt
ctcttcagcggttccaaaggggaggtgtgctctgttgaacccctgcatgctcctccagag
gccagagatcaccccatcacccactattctctcctggccatggcctctctcactaagatt
ctggttattggcctgaagccctcacttaaagtctggataacgttcccctacagtaaatct
gatccgtccagtgttccccagctggcctggcagtttgttccagtccagagaaccgtgaac
cccgtcctggccttttccaaaggagatacagttcacttcctcttggtaaaaaaggaggaa
acgggcaccatccatgtaatcaaacaaaggcagctccatgtcagctgtgacatcatcagc
ctctgttggatcaacagccgcacgctggtcttggtggacagccatgaaaaactgcaggtt
gtggaccgacccagtcaggaggttttggagaccctcgacttggaacaggtgcagctggtt
tataacagcagacatttcaaatcgctggccactggagggaatgtctcccaggctctggct
ctcgttggagaaaaggcctgttaccagtcggtctccagctacgcgggacagattatatat
ctgggcaccaagtctgctcacatcatgactctcagggcctggagggagcggatcgactgt
ctgctgaagctggaacattttcccgaggccctgtctctggcctggtcgttccacgagggg
acagctaaggctgtggtcggtctgtttggagacccggtgaaaagaaaaggagtcgttgct
gacaagatggtagagatgattttccagtttgcagactttgccctaaagaagtgtccagaa
caaggaaagatccaagtgctggaacaacacttccatgaagtggttccagtcctggttgat
tactgtttgctgctgaagaggcttgacctgctgtttaaccagctgtaccctcaactggtg
gagaacatggtggctaaaggcatcttcttggaatccctggagtcctacattatcgcagac
cgccttggtcaccttcccacaccggtcatgaaagaccttctcatgcattaccaaagcagc
tgtatgatggagagcctggagagatgcatcgtccatctggacatcaccagcctggacata
cagcaggtggttcaggtgtgttgggagaaccaactctacgatgcggtgatctacgttttc
aatcgtggcatgaacgactacactacacctatggaaaaactctttgcagtaattgtccca
ccagtaagggaggggaagagtcttacagatgtggaagtggtgatgggaaacaaactcctg
gtgtatatcagctgctgtctggcaggacgggcatatccattaggagacatccccgaagac
cttgtggtccaggtaaagcatcaggtgtttgaatttttgatccgtcgccattcagcggac
tcctcagaggaggaagaagtgttcccgtttattcgcactctgctccactttgacactcga
gagttcctcaacgtcctcgccatgacattcgaagacttcaagaacgacaaacaggccctt
gaataccagcagaggatcgtggacatcttactgcaggtgatggtggacaacccagacttt
actccgtcccaggtgggaggactcttcacctttttagcgcgacagttggccaaaccagac
aacacacttttcgtaaacaggaagctcttcgatcaggtcctggagtttctgtgctgccca
gatgacgactcccgtcacactgagaggcagcaggttctgttggagctgctgcaggttggg
agcgtggtccagtttaatgaagagaggcttctgatgctggccgagaaagccaaattctac
cagatatgtgaatttctttatgagaagcaacatctctacgacaggatcattgactgttac
ctgagagaccccctcagaaagggagaggtcttcagctacatccacaatctgctgtccatg
cctggttacagcccggaggagaagcagtcagtcatggataaagttcggcagcatatgcat
gagctggtgatctttgaccccaataaatcagctgatttagtgacgtttcactttgctgaa
gaggtccagcaaataatctctgagcttcaggatgatcggctgctcttcaggttcctcagc
tgtctcttggagcaacaggacggccaacattcgggccccgtcctactgctgcaacctgaa
ctccacgagcttcagctggacctgctcagccgttttgaccccaaacacattttgaatttc
ctccagacctcccaacactatagactagaagaggcagtacagataacacagaagtatcac
cacaacaaagctacagcctttcttttggagaagaggggcgatgtcgaaggagcttttgct
gtgctgttggagacgctaaaggaaaacctgagtcgtgtcacagctgagagagcaggagat
gatgaagaggaaaccctgacaaatgtcaaggattctctaagtgacatcatctccttgtgt
caccagagctctcagagccttaaccagcagcaaagagaggtcctgtggtttccactgttg
gagaccatgatggctgcacaaaaacaagtgaagggacgggacagtaaacacacatttgag
gtgctgaaggagctgacgatgaaggtcctcaaccgtatgagcagcttcatttctcttccc
gccatcatccagcggatactccaggatccagtctacgggaaaggaaagctggcagaaatc
cagagccttattttgggcatgctcgacactttcaactatgagcagacgttacttgaaaca
accaccagtttgttgaaccatgacctccactggtccctggcgcacttgcgcgcagcggtc
actagggggatccacccacgacaggactgctgcaacatctgcctgcagcagtacaagagg
aggcaggatgcagcagcagcagacgagatcatcgtcttcagctgtgggcatctgtaccac
ctccagtgtctgcagcagaaggactctggctggggttttacgtcagatgttcagcagcaa
tggagctgctacaaatgttcctccagcaaaggaggccgagcggcgtcggctgattcgaga
ggccgcagcttgtccctggcacagacctgcgttacatcattacaacacgatggggcaaca
gaagctgacgggaagaaggggtttgtcgaagtcaccttagaccatcagcaagaacagtcc
tgggatcagctacgctgcctttacagaggaccgtccaggctgtccatcctgtccgaactt
tcacacagtaacgagaagacgggccttctgatcggcagccagacggggacagatcacttc
cagctgaaactggcccccccgcctctgttcgaggagtag
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