Takifugu rubripes (torafugu): 446042
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Entry
446042 CDS
T02386
Symbol
trf3
Name
(RefSeq) TATA box-binding protein-like protein 2
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
446042 (trf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tru03000
]
446042 (trf3)
03021 Transcription machinery [BR:
tru03021
]
446042 (trf3)
Transcription factors [BR:
tru03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
446042 (trf3)
Transcription machinery [BR:
tru03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
446042 (trf3)
RNA polymerase III system
TFIIIB
446042 (trf3)
RNA polymerase I system
SL1/TIF-1B
446042 (trf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-GeneID:
446042
NCBI-ProteinID:
NP_001027845
Ensembl:
ENSTRUG00000009283
UniProt:
Q6SJ94
LinkDB
All DBs
Position
2:12930076..12932833
Genome browser
AA seq
322 aa
AA seq
DB search
MDESALERYFEDSIANDSGFILEEELGLHSPALSSTQDSTYLSGRAGPSRESGAELDLSF
LPDDLSTQEELGHHDNTAQAEDRAVSQDSAVCLDYDSQNSATPAATFDQQNPSLLGGGVH
NSPFYSMTPMTPMTPMTPVTERSGIIPQLQNIVSTVNLGCPLDLKFIALQARNAEYNPKR
FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFMDFKIQ
NMVASCDVCFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAK
ERAEIYEAFENIYPILRGFRKQ
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtctgcgctggagcgttacttcgaagactccattgcaaatgactctggcttt
atactggaggaggagctgggcttgcatagccccgccctctcatctacacaagactccacc
tacctgtcaggaagggcggggcccagcagagaatcaggggcggaactggacctcagcttc
ctgcctgatgacctaagcacacaggaggaactcggtcaccatgacaacacagctcaggct
gaagatcgggctgtgtctcaggatagtgcggtgtgccttgactacgactcccagaattcc
gcaacaccagcagccacatttgaccagcagaacccctctctgttaggaggtggggtacac
aactcccctttctattcaatgaccccaatgacccccatgactccaatgacccctgtgacg
gagaggtcaggaatcatcccacagcttcagaacatcgtctctacagtcaacctcgggtgt
ccattggatctaaagtttattgccctccaagctagaaatgcagagtacaacccaaagcgt
ttcgctgcagtcatcatgaggattcgtgaacccagaaccaccgcgctaatcttcagctca
ggaaaaatggtctgtaccggagccaaaagtgaggagcagtcacgactggcagccaggaag
tacgctcgcgtggtgcagaaactgggcttcccagcccgattcatggacttcaaaatccag
aacatggtggcaagctgtgacgtctgctttcccatcagactggaaggactggtcctgacc
catcaacagtttagcagttatgaaccggagctgtttccaggactcatctaccgcatggtg
aagccacgcatcgtcctgctgatctttgtttcaggaaaagtggttctgaccggcgctaaa
gaacgagctgagatctacgaggccttcgagaacatttatccgatcctgcgaggcttccgg
aaacagtga
DBGET
integrated database retrieval system
