Tropicibacter oceani: QF118_02345
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Entry
QF118_02345 CDS
T09169
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
try
Tropicibacter oceani
Pathway
try03030
DNA replication
try03410
Base excision repair
try03420
Nucleotide excision repair
try03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
try00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QF118_02345 (polA)
03410 Base excision repair
QF118_02345 (polA)
03420 Nucleotide excision repair
QF118_02345 (polA)
03440 Homologous recombination
QF118_02345 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
try03032
]
QF118_02345 (polA)
03400 DNA repair and recombination proteins [BR:
try03400
]
QF118_02345 (polA)
Enzymes [BR:
try01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QF118_02345 (polA)
DNA replication proteins [BR:
try03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QF118_02345 (polA)
DNA repair and recombination proteins [BR:
try03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
QF118_02345 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QF118_02345 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Taq-exonuc
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WGW04404
LinkDB
All DBs
Position
complement(472975..475782)
Genome browser
AA seq
935 aa
AA seq
DB search
MAGKFGKGCHLHLIDGSAYIFRAFHALPPLTRKSDGLPIGAVSGFCNMLQRYIDGNNGSD
APTHVAVIFDKGSHTFRNDMYDQYKANREAMPEDLRPQIPLTREATKAFNIACEELEGFE
ADDIMATLARQAREAGGRVTILSSDKDLMQLVGGGVEMLDPMKNKLIDRDGVHEKFGVGP
ERVVDVQALAGDSVDNVPGAPGIGIKTAALLINEFGSLEELLDRAEEIKQPKRRQTLIEH
RAQIELSKRLVQLDEHMELPFTLDDLEVREPVPEELLDFLSRMEFRTLTKRIADKLDVEA
PAIPDTTPEGANPPEQAPDWPAIDPSKYECVSDSAALQRWIDKANDRGWIAVDTETTGLN
DMACDLVGISLCVEPGEACYIPLIHRATATDDLFGNDDLAEGQMPLNAVLDALKPMLEDP
AVLKIGQNMKFDAKIFSRYGVEVAPIDDTMLMSYAMNAGLHGHGMDTLAERYLSHTPIPI
KDLLGSGKKQITFDRVPIEDAVKYAAEDADVTLRLWKTFKPQLHRARVTRVYEGLERPLV
PVLKQMEMAGVKVDRDVLSRMSNAFAQKMAGLEAEIHELAGETFNVGSPKQLGEILFDKM
GLEGGKKGKTGAYATGADILEDLATEHDLPARILDWRQLSKLKSTYTDALQEHINKDTGR
VHTSYSIAGANTGRLASNDPNLQNIPVRSEEGRRIREAFIADEGKVLVSLDYSQIELRIL
AHMADIPALKEAFRDGHDIHAMTASEMFNVPMEDMTPDIRRQAKAINFGVIYGISGFGLA
RNLRIPRVEAQGFIDRYFERFPGIKTYMDDTIAFATEHKRVETLFGRVIHTPEIAAKGPR
AGFAKRAAINAPIQGTAADIIRRAMVRMPDAIAGLPAKMLLQVHDELIFEVEKDAAEDLI
KAARTVMEGAAEPVVKLDVPLIVDAGQGANWAEAH
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcaaatttggcaagggatgccatctgcatctgatcgacggatcggcctatatt
ttccgggctttccacgcgctgccgccgctgacccggaaatctgacgggttgccgattggt
gcggtcagcggcttttgcaacatgttgcagcgctatatcgacggcaacaacgggtcggac
gcgcccacccatgtggcggtgattttcgacaagggcagccatacatttcgcaatgacatg
tacgatcagtacaaggccaaccgcgaggctatgcccgaggacctgcgcccgcagatcccg
ctgactcgcgaggcgaccaaggcgtttaacatcgcctgcgaggaactcgaagggttcgag
gcggacgacatcatggcgacgctggcacgccaggcacgcgaggcaggggggcgggtgacg
atcctgtcgtcggacaaggacctgatgcagctggtcggcggcggtgtcgaaatgctggac
ccgatgaagaacaagctgatcgaccgcgatggcgtgcatgaaaagtttggcgttggtccg
gaacgggtggtcgatgtgcaggcgctggccggggattccgtcgacaacgtgccgggcgcg
ccgggcatcggtatcaagacggcggcgctgctgatcaacgaattcggctcgctcgaggaa
ctgctggaccgggccgaagagatcaagcagcccaagcgccggcagaccctgatcgagcac
cgcgcgcagatcgagctttcgaaaaggctggtgcagctggacgaacacatggagctgccg
ttcacgctggacgatctggaagtgcgcgagccggtgccagaggagctgctggattttctg
tcgcggatggaattccgcaccctgaccaaacgcatcgccgacaagctggacgtcgaggcc
cccgccattcccgacaccacgcccgagggcgcgaacccgccggaacaggcgcctgactgg
ccggccatcgacccgtcgaaatacgaatgcgtgtcggactcggcggcgttgcaacgttgg
atcgacaaggcgaacgatcgtggctggattgccgtcgatacagagacgacgggcctgaac
gacatggcctgcgatctggtcggcatctcgctgtgcgtcgagccgggcgaggcctgctat
attcctctgatccatcgggcgaccgccaccgacgatctgttcggcaatgacgatctggcc
gagggacagatgccgctgaacgcggttctggatgccttgaaaccgatgcttgaggacccg
gcggttctgaagatcgggcagaacatgaaattcgacgccaagatattctcgcgctacggg
gtcgaagttgcgccgatcgacgatacgatgctgatgtcctacgcgatgaacgcgggtctg
catgggcatggcatggacacgctggccgaacgctatctgtcgcacacgccaatcccgatc
aaggacctgctggggtcgggcaaaaagcagatcacctttgaccgcgtgcccatcgaggac
gcggtcaaatacgccgccgaggatgcggatgtgacgctgcgcctgtggaagaccttcaaa
ccgcagctgcaccgcgcccgtgtgacccgtgtctacgaagggttggaacggccgctggtt
ccggttctcaagcagatggaaatggccggggtcaaggtggaccgcgatgtgctgtcgcgc
atgtccaacgcctttgcgcaaaagatggcggggctcgaggcggaaattcacgagttggcg
ggcgaaacctttaacgtcggcagccccaaacagttgggcgagattctgttcgacaagatg
gggcttgagggcggcaaaaagggcaagaccggggcctatgccaccggcgccgatatcctt
gaggatcttgccaccgaacacgatctgcccgcgcgtattctggattggcggcagctgtcg
aaactgaaatcgacctacactgacgcgctgcaggaacacatcaacaaggacaccgggcgg
gtgcatacctcgtactcgattgcaggggcgaacaccgggcgtctggcgtcgaacgatccg
aacctgcagaacattcccgtccgctcagaggaaggccgccgcatccgcgaggcctttatc
gcggatgagggcaaggtgctggtgtcgctggactattcgcagatcgaattgcgcatcctt
gcgcatatggccgacattcccgcgctgaaagaggcgttccgcgacggccacgacattcac
gccatgaccgcatccgagatgttcaacgtgccgatggaagacatgacaccggacatccgg
cgtcaggccaaggcgatcaactttggcgtgatctacggcatttcgggctttggccttgcg
cgcaacctgcgcatcccgcgggtcgaggcacagggctttatcgaccggtatttcgaacgc
ttcccggggatcaagacctatatggatgacacgatcgcctttgcgaccgagcacaagcgg
gtggaaaccctgtttggccgggtgatccacacgcccgaaatcgccgccaaggggccgcgc
gcgggctttgccaaacgcgcggcgatcaatgcgccgatccagggcacggcggcggacatc
atccggcgcgccatggtgcggatgcccgatgccatcgccggtctgcctgcgaagatgctg
ttgcaggtgcatgacgaattgatcttcgaggtcgaaaaggatgcggctgaggatctgatc
aaggccgcgcgtaccgtcatggaaggggcggcggaaccggtggtcaaactggacgtgccg
ctgatcgtggacgcaggccagggcgccaactgggccgaagcgcactaa
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