Tropicibacter oceani: QF118_05830
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Entry
QF118_05830 CDS
T09169
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
try
Tropicibacter oceani
Pathway
try03030
DNA replication
try03430
Mismatch repair
try03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
try00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QF118_05830 (dnaE)
03430 Mismatch repair
QF118_05830 (dnaE)
03440 Homologous recombination
QF118_05830 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
try03032
]
QF118_05830 (dnaE)
03400 DNA repair and recombination proteins [BR:
try03400
]
QF118_05830 (dnaE)
Enzymes [BR:
try01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QF118_05830 (dnaE)
DNA replication proteins [BR:
try03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QF118_05830 (dnaE)
DNA repair and recombination proteins [BR:
try03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QF118_05830 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
SSB
Motif
Other DBs
NCBI-ProteinID:
WGW05067
LinkDB
All DBs
Position
1210486..1213983
Genome browser
AA seq
1165 aa
AA seq
DB search
MSDPRFIHLRVHTEYSLLEGAVRLKKLPGLCEAMGMPAVAVTDTNNLFAALEFSVSASGA
GLQPIIGCQVDLRYLDPAPGERPKPPAPVVLLAQSEAGYEHLMKLNSCLYLREGSELPFV
TLDELAHHSEDVICLTGGPDGPVGRLLRAGQRPAAQGLMDRFKDIFGDRLYVELQRHPEG
GGLPEAEKLSERGFVEMAYAMDLPLVATNDVYFPKSDMYEAHDALICISEGAYVDQQEAR
RRLTPQHYLKTPEEMATLFADLPEALENTVEIARRCAFMAYKRDPILPKFADDEVAELRR
MANEGLQARLAVIPHAVSVEEYQKRLDFELDIIEGMGFPGYFLIVADFIQWGKDQGIPVG
PGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIQYVQ
QKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPVEGVKPVSIEQALRD
EPRLAEEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDALVPLYRDPRSDMP
ATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRPLHVAADGTQLYEPAEGGEN
QINLIPLDDEASYKLYAAAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPME
NIPTYCEVKNGIKEITSVHPSIDHILAETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRA
MGKKIKEAMDAERPKFEEGAAKNGVDKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQT
AWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLKLPWVPPCVNRSLATFDVVNGEL
VYALGALKNVGVEAMKLIVEGRGDRAFATLFDMARRVDLKRVGKRPMEMLARAGAFDQLD
GNRRRVFDSLDALVAYSAAVHEQKASDQVSLFGEAGDDLPEPRMSPVPDWLPAERLAEEF
KAVGFYLSGHPLDDYMPALKRQDVMTLDEVTGRAERGPLVAKLAGVVAGRQERKSARGNR
FAFAQLSDPTGAYEVTLFSETLEKSREYLETGSKVVITVEATMESDQLKLLGRGVAPVDA
VASGGGVMGLKIHIEEPGALPQIASVLGRAAEQMPRAARGPVRLCLNDAGLPGEVEMDLN
QDFPVTPEIKGAIKSLDGVLAVEDF
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcctcgattcatccacctgcgcgtgcacaccgaatattcccttttggaaggg
gcggtgcggctgaagaaactgcccggcctgtgcgaggcgatgggcatgccggccgttgcc
gtgaccgacacgaacaacctgttcgcggcgctggagttttcggtttcggccagcggtgcg
ggccttcagccgatcataggttgccaggtcgatctgcggtatctggatccggcgccgggc
gaacggccgaaaccgcccgctccggtggttttgctggcgcagagcgaggccgggtatgaa
cacctgatgaagctgaattcctgcctgtacctgcgcgaagggagcgagctgccctttgtg
acgctggacgagctggcgcaccattccgaggacgtgatctgcctgaccggtggacccgac
ggccccgtgggccggctgctgcgcgctggtcagcgccctgcggcgcaagggttgatggac
cggttcaaggacattttcggcgaccggctgtatgtcgaacttcagcgccaccccgagggc
ggcgggttgcccgaggcggaaaagctgtccgagcggggctttgtcgaaatggcctatgcc
atggacctgccgctggtcgcgaccaatgacgtgtatttcccgaaatccgacatgtacgag
gcgcatgacgcgctgatctgcatttccgagggcgcctatgtcgaccagcaggaggcgcgc
cgccgcctgaccccgcagcactacctgaaaacccccgaggaaatggcgacgctgttcgcc
gacctgcccgaggcgctggaaaacaccgtcgagatcgcgcgccgctgcgccttcatggcc
tataaacgcgatccgatcctgccgaaattcgccgacgacgaggtggccgagttgcgccgc
atggcgaacgaggggcttcaggcgcgtctggccgtgatcccgcatgcggtctcggtcgag
gaataccagaaacggctcgatttcgagcttgatatcatcgagggcatgggctttcccggc
tacttcctgatcgttgcggactttatccagtggggcaaggatcagggtattccggtgggg
ccggggcggggttcgggtgcgggtagccttgtggcctatgcgctgacgatcaccgatctt
gacccgctgcgctattccctgctgttcgaacgctttttgaaccccgaacgggtgtcgatg
cccgactttgacatcgacttttgcatggaccgccgagaggaagtgatccagtacgtccag
cagaaatatggccgcgacaaggtggggcagatcatcacctttggtgcgctgttgtccaag
gcggcggtgcgcgacgtgggccgggtgttgcagatgccctatgggcaggtggaccgcctg
tccaagatgatccccgtcgaaggggtcaaacccgtcagcatcgaacaggcgctgcgcgac
gaaccccgcctggccgaagaggcacgcaacgaagaggtcgtggaccggctgttgacttac
ggtcagcaggtcgaggggctgctgcgcaatgcctcgacccacgccgccggtgtggtgatc
ggggataggccgctcgatgcgcttgtgccgctgtaccgcgatccgcgctctgacatgccg
gccacccagttcaacatgaaatgggtcgaacaggccggcctggtgaagttcgactttctg
ggtctgaaaactctgaccgtcatccagaacgcggtgaacctgatcctgaaatccgggcgg
ccgttgcatgtggctgctgatggcacgcagctttatgaacccgccgagggcggcgagaac
cagatcaacctgatcccgctggacgacgaagcctcttacaaactctatgccgctgcgaaa
accgtggcggtgttccaggtggaaagctcggggatgatggatgcgctcaagcgcatgaaa
cccacctgcatcgaggatatcgtggcgctcgtggcgctgtatcgccccggtcctatggaa
aacatcccgacctattgcgaggtcaagaacgggatcaaggagatcacctcggtccacccg
tcgatcgaccacatccttgccgaaacccagggcatcatcgtttatcaggaacaggtgatg
cagatcgcgcaggtcatggcgggttacagccttggcggcgccgacctgctgcgccgcgca
atgggcaaaaagatcaaggaggcgatggacgccgagcgcccgaaattcgaggaaggcgcg
gccaagaacggcgtcgacaagaagaaggcgagcgaggttttcgaccttctggaaaaattc
gccaactacggtttcaacaaatcccacgcggcggcctatgcggtggtgtcctaccagact
gcatggctcaaggcgaaccacccggtcgaattcatggccggggtgatgaactgcgatatc
cacctgaccgacaagctggccgtctatttcgaagaggtccgcaaggggctgaaactgcct
tgggtgccgccttgcgtgaaccggtcgctggcaacctttgacgtggtgaacggcgaattg
gtctatgcgctgggagcgctgaagaacgtcggcgtcgaggcgatgaaactgatcgtcgaa
gggcgtggggacagggcctttgccacgctgttcgacatggcccgccgggtcgatctgaag
cgcgtaggcaaacgcccgatggaaatgctggcgcgggcaggggcctttgaccagctggac
ggcaaccgccgccgtgtctttgacagccttgatgctttggtcgcctattctgccgccgtc
cacgaacaaaaggccagcgatcaggtgtcgctgttcggtgaagcgggcgacgatctgccc
gaaccgcgcatgtccccggtgcccgactggctgcccgccgaacggctggccgaggaattc
aaggccgtggggttctatctgtccggccacccgctggacgattacatgcccgccctgaaa
cggcaggacgtgatgaccctggacgaggtcacgggccgcgccgaacgcgggcccttggtg
gccaaactggcgggcgttgtcgccgggcggcaggaacgcaaatcggcacgcggcaaccgc
tttgcctttgcccagctgtccgacccgaccggcgcttacgaggtgacgctgttttccgaa
acgctggaaaagtcgcgcgaatacctggaaaccggctccaaggtcgtcatcacggtcgag
gcgacgatggaaagcgaccagttgaaactgctggggcgtggggttgcgccggtcgatgcg
gtcgcctcgggcggcggcgtcatggggctgaagatccacatcgaagagcccggcgcgttg
ccgcagatcgcctcggtgctgggccgcgctgccgagcagatgccaagggccgcgcgcggc
ccggtgcgcctgtgcctgaacgacgcgggcctgcccggcgaggtcgaaatggacctgaat
caggatttcccggtgacaccggaaatcaagggggcgatcaaatcgctggacggcgttctg
gcggtcgaggatttctga
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