Tropicibacter oceani: QF118_06595
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Entry
QF118_06595 CDS
T09169
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
try
Tropicibacter oceani
Pathway
try03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
try00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QF118_06595 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
try03021
]
QF118_06595 (rpoC)
03400 DNA repair and recombination proteins [BR:
try03400
]
QF118_06595 (rpoC)
Enzymes [BR:
try01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QF118_06595 (rpoC)
Transcription machinery [BR:
try03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QF118_06595 (rpoC)
DNA repair and recombination proteins [BR:
try03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QF118_06595 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
WGW05207
LinkDB
All DBs
Position
1381519..1385766
Genome browser
AA seq
1415 aa
AA seq
DB search
MNQELTNNPFNPVAPVKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMLNEEEFLDAQDQYGMDAFT
ANIGAEAIREMLAAIDLEAEAENLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTIMREGMKGEGMIFSSIEEVEHAL
TAGEVHLHAKIQARVRQIDDEGNEIVKRFETTPGRVRLGALLPMNAKAPFDLVNQLLRKK
DVQRVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPESKWPIVEETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTEAMMATISAERRDADGSEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRLDDCGTDRAITAEAAVNDGEVVSSIGERVLGRV
AADDVCVPGTEDVIVKQGQLIDERMADAIEEAGVQSMRIRSPLTCEAEEGVCATCYGRDL
ARGTKVNTGEAVGIIAAQSIGEPGTQLTMRTFHMGGVAQGSSRSFLEASHAGKIVFANPA
TIENAAGEQIVMNRNMTLLIMSDQDEELSSHKIGYGAKLFVKEGATVARGDKLFEWDPYT
LPIIAEKDGIAKHVDLVNGLAVREETDDATGMTQKIVIDWRAAPKGNELKPEIILMDADG
EPVRNDQGNPITYTMSVDAILSCEDGQEVKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRITIEPTDESLEPREYMIPKGKHIPVGEGDFIQ
KGDYIMDGNPAPHDILSIMGIEALANYMIDEVQDVYRLQGVKINDKHVEVIVRQMLQKWE
ILDSGDTTLLKGEHVDKAEFDLANEKSEKKGGRPAKGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQDMRHIAQQRDNVVIEARRE
EAEAAAALAAPDMAADVVGGDEFDTLIVDTPESRE
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaacaatccgttcaaccctgttgcaccggttaagacattcgac
gagatcaaggtctcgcttgcttcccccgaacggatcctttcgtggtccttcggcgagatc
aagaagccggaaaccatcaactaccgcacgttcaagcccgagcgtgacggtctgttctgc
gcgcgtatctttggcccgatcaaggattacgaatgcctgtgcggcaaatacaagcgcatg
aaatatcgcggcgtcgtctgcgaaaaatgcggcgtcgaagtcacgctgcaaaaggtccgc
cgcgagcgtatgggccacatcgaactggccgccccctgcgcccatatctggttcctcaag
tcgctgccctcgcgcattggcctgatgctggacatgacgctgcgcgatctggaacgcgtg
ctgtactttgaaaactacgtggtgatcgaacccggtctgaccgacctgacctatggccag
atgctgaacgaagaggaattcctcgacgcgcaggaccagtacggcatggacgccttcacc
gccaacattggcgccgaagcgatccgcgaaatgctggcggccatcgaccttgaggccgag
gcagaaaacctgcgcgccgacctcaaagaggccaccggcgagctgaagcccaagaagatc
atcaagcgcctgaaggtggttgagagcttcctggaatccggcaaccgcccggaatggatg
gttctgaccgtgatccccgtgatcccgccggaactgcgtccgctggtgccgctggatggc
ggccgttttgcgacctctgacctgaacgatctgtatcgccgtgtgatcaaccggaacaac
cgcctcaagcggctgatcgagctgcgcgcgcccgatatcatcgtccgcaacgaaaagcgg
atgcttcaggaatccgtggacgcgctgtttgacaacggtcgtcgcggccgcgtcatcacg
ggcgccaacaagcgtccgctgaagtcgctctctgacatgctcaagggcaagcagggtcgc
ttccgtcagaaccttttgggcaagcgcgtcgacttttcgggccgttcggtcatcgtgacc
ggtccggaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttc
aagcccttcatctattcgcgactggaggccaagggcctgtccagcaccgtgaagcaggcg
aagaagctggtcgaaaaagagcgccccgaggtttgggacatcctcgacgaggtgatccgc
gaacacccggtcatgctgaaccgtgcgccgacgctgcaccgtctgggtatccaggccttt
gaacccacgctgatcgaaggcaaggccatccagctgcacccgctggtctgttcggccttc
aacgccgactttgacggcgaccagatggccgttcacgtcccgctgagccttgaggcccag
ttggaagcgcgcgttctgatgatgtcgacgaacaacgttctgtcgcccgccaacggcgcg
ccgatcatcgttccgtcgcaggacatgatccttggtctgtactacgtcaccatcatgcgc
gaaggcatgaagggcgaaggcatgatcttctcgtccatcgaagaggtcgagcacgccctg
accgccggcgaagtgcacctgcacgccaagatccaggcccgcgtccgtcagatcgacgac
gaaggcaacgaaatcgtcaagcgtttcgaaaccacgccgggccgtgtccgtctgggtgcg
cttctgccgatgaacgccaaggcgcctttcgacctggtcaaccagctgctgcgcaagaaa
gacgtgcagcgggtcatcgacaccgtttaccggtattgcggtcagaaagagtcggtcatc
ttctgtgaccagatcatgaccatgggcttccgcgaggccttcaaggcgggcatttccttc
ggcaaggatgacatggtcatccccgaaagcaaatggccgatcgtcgaggaaacccgcgac
caggtgaaggatttcgaacagcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaggttgtcgatgcctggtccaagtgtaacgacaaggttaccgaagccatgatggcc
accatctcggccgagcgccgcgatgcggacgggtcagaaatggagccgaactcggtctac
atgatggcccactccggtgcgcgtggctcggtcacccagatgaagcagctgggcgggatg
cgcggcctgatggccaagccgaacggcgacatcatcgaaacgccgatcatctctaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggcgcccgcaagggtctg
tccgacacggctctgaagacggcgaactcggggtatctgacccgccgtctggtggacgtc
gcgcaggactgcatcgtgcgtctggacgattgcggcaccgaccgcgccatcaccgccgaa
gcggcggtgaacgacggcgaagtcgtgtcctcgatcggtgaacgcgttctgggccgtgtg
gccgcggacgacgtctgcgttccgggcaccgaagacgtgatcgtcaagcagggtcagttg
atcgacgaacgcatggcggacgcgatcgaagaggcgggcgtgcagtccatgcgcatccgc
agcccgctgacctgcgaagccgaagagggcgtctgcgccacctgctatggtcgtgacctg
gctcgcggcaccaaggtgaacaccggcgaagccgtcggcatcatcgcggcgcagtcgatc
ggtgaacccggcacgcagctgaccatgcggaccttccacatgggcggcgttgcgcagggt
tcgtcgcggtctttcctcgaagccagccacgccggcaagatcgtgttcgcgaaccccgcg
accatcgaaaacgccgcgggcgagcagatcgtcatgaaccgcaacatgaccctgttgatc
atgagcgatcaggacgaggaactgtcgagccacaagatcggctacggtgccaagctgttt
gtcaaagagggtgcaaccgttgcccgcggcgacaagctgtttgaatgggacccctacacg
cttccgatcatcgccgagaaggatggtatcgccaagcacgtcgacctcgtgaacggcctt
gccgtgcgcgaagagacggacgatgccacaggcatgacccagaagatcgtgatcgactgg
cgcgcggcccccaagggcaacgagctcaagcccgagatcatcctgatggatgccgacggc
gagccggtgcgcaatgatcagggcaacccgatcacctacaccatgtcggtggacgcgatc
ctttcctgtgaagacgggcaagaggtcaaggccggtgacgttgtggcgcgtatcccgcgc
gaaggcgccaagaccaaggacatcaccggtggtctgccgcgtgtggccgaactgttcgaa
gcccgtcgtcccaaggatcacgcgatcatcgcggaaatcgacggctatgtgcgctttggc
aaggactacaagaacaagcgccgcatcaccatcgagccgaccgacgagagccttgaaccg
cgggaatacatgatccccaagggcaagcacatcccggtgggcgaaggcgacttcatccag
aagggcgactacatcatggacggcaacccggccccgcacgacattctgtcgatcatgggg
atcgaggcgctggcaaactacatgatcgacgaggtccaggacgtctatcgactgcagggt
gtgaagatcaacgacaagcacgtcgaagtgatcgttcgccagatgctgcaaaagtgggaa
atcctcgacagcggcgacaccacgttgctcaagggcgaacacgtcgacaaggctgaattc
gaccttgccaacgagaagtccgagaagaagggcgggcgtcctgccaagggcgaaccgatc
ctgctgggcatcaccaaggcgtcgctgcagacccggtcgttcatctcggcggcctcgttc
caggaaaccacccgcgttctcaccgaggcatcggtgcagggcaagaaagacaagctggtc
ggtctgaaggaaaacgtcatcgtgggtcgtctgatcccggcgggcaccggtggtgccacg
caggacatgcgccacatcgcgcagcagcgtgacaacgtcgtgatcgaagcacgccgcgaa
gaagccgaggccgccgccgctctggctgcgcccgacatggccgctgacgtggtcggtggg
gacgagttcgacaccctgatcgtcgacacgcccgaaagccgcgagtga
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integrated database retrieval system
