Tropicibacter oceani: QF118_06760
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Entry
QF118_06760 CDS
T09169
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
try
Tropicibacter oceani
Pathway
try03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
try00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QF118_06760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
try03019
]
QF118_06760
Enzymes [BR:
try01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QF118_06760
Messenger RNA biogenesis [BR:
try03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QF118_06760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WGW05240
LinkDB
All DBs
Position
complement(1407814..1409076)
Genome browser
AA seq
420 aa
AA seq
DB search
MGLPARLLANLAELNISEPTPIQIQAIPEAMKGRDVMGLAQTGTGKTAAFGLPLLSALLR
IEGRPMPKTTRGLILAPTRELAKQIVDNLRAYGAGTQVRVNLVVGGQSLNAQAQKLAKGC
DLLVATPGRLIDLIERKAVRLDMTGFLVLDEADQMLDMGFIHALRQIAPLLRKDRQTMLF
SATMPKQMNELAQAYLKDPIRIEVSPPGKPIEKIEQSVHFVEQAHKPKLLITHLDRHRDD
AALIFARTKHGAERLKKSLESQGFSAGSIHGNKSQGQRDRALQAFRDGELKVLVATDVAA
RGIDIPAVRYVYNYDLPNVPDNYVHRIGRTARAGRDGTAVAYCAPDEMGELKAIQKVMKR
DIDVASGEAWEGVAKKKPNGGGGRGRGGKPGGGGRPGGGGGGGGRPQRARRSGGGKSRAA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggggcttccggcccgccttctggccaacctggccgaactgaacatctctgaaccgacg
ccgatccagatccaggccatccccgaggccatgaaaggccgcgacgtgatgggccttgcc
cagaccggcaccggcaagaccgccgcctttggcctgccccttctgtccgcgctgctgcgc
atcgaaggccgccccatgcccaagaccacccgcggtctgatccttgcccccacccgcgag
ctggcaaaacagatcgtcgacaacctgcgcgcctatggcgccggcacccaggtgcgcgtc
aaccttgtggttggtggtcagtccctgaacgcgcaggcacaaaaactggccaagggctgt
gaccttctggtcgccactccgggccgcctgatcgacctgatcgaacgcaaggccgtgcgc
ctggacatgaccggtttcctggtgctggacgaggccgaccagatgctggacatgggcttt
atccacgcgctgcgccagatcgcgccgctgctgcgcaaggaccgtcagaccatgctgttc
tcggccaccatgccgaaacagatgaacgaactggcgcaggcatacctcaaggatccgatc
cgcatcgaggtgtcgcctccgggcaaaccgatcgaaaagatcgaacagtcggtgcatttc
gtcgaacaggcgcacaagcccaagctgctgatcacgcaccttgatcgtcaccgcgacgat
gccgcgctgatctttgcccgcaccaagcacggcgctgaacgcctgaaaaaaagccttgaa
tcgcagggcttctcggccgggtcgatccacggcaacaaaagccagggccagcgcgatcgc
gcgcttcaggccttccgcgatggcgaactcaaggtgctggtcgccaccgatgttgccgca
cgcggcatcgacattcccgcggtgcgctatgtctacaactacgatctgccgaacgtgccg
gacaactatgtccaccgcatcggccggacggcccgcgccggccgtgacggcaccgccgtg
gcctattgcgccccggacgagatgggcgaactgaaggccatccagaaggtgatgaagcgc
gacatcgacgtcgcctcgggcgaagcctgggaaggcgtcgccaagaaaaagccgaacggc
ggcggcggtcgtggccgtggtggcaagcccggtggcggcggtcgtcctggtggcggcggc
ggcggcggtggccgtccccagcgcgctcgccggtccggcggcggcaagtcccgcgcagcc
tga
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