Tropicibacter oceani: QF118_14395
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Entry
QF118_14395 CDS
T09169
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
try
Tropicibacter oceani
Pathway
try03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
try00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QF118_14395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
try03019
]
QF118_14395
03009 Ribosome biogenesis [BR:
try03009
]
QF118_14395
Enzymes [BR:
try01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QF118_14395
Messenger RNA biogenesis [BR:
try03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QF118_14395
Ribosome biogenesis [BR:
try03009
]
Prokaryotic type
rRNA processing factors
QF118_14395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
New_glue
Motif
Other DBs
NCBI-ProteinID:
WGW03109
UniProt:
A0ABY8QES0
LinkDB
All DBs
Position
complement(2997037..2999976)
Genome browser
AA seq
979 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPIADRKALMEEEAALAAEEEEERERPKKRTRGRSRRKPS
QAENAKSDDEVITAEPSREVSGMETIDLGDDTEEGAPGEGLSPMETVHETPVADPDELAA
ETTAETTAEAEAPAAEAEAARPEAAEEADDDGDDEADDGDDDEADAASKDESIESVSDDD
SEEDIRPRRKPRPRKYKIQEVIKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPN
TARGGGISRKITNAADRSKLKEIAGEIDVPKGAGLIIRTAGAKRTKTEIKRDYEYLQRLW
EQIRELTLKSSAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGERGYRIAKDFMKMIMPSH
AKNVKHYVDQMPLFARHQVESYLSGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKE
GSIEETATKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKKLKDKLKTDRA
RIQVGRISGFGLLEMSRQRLRPGMIEATTAPCPSCHGTGLIRSDDNMALQVLRQIEEEGT
RRRSREVLVKCPVSIANYLMNQKREHIAQIESRYGMSVRIEGDAHLVAPDYTMEKFKTAT
RAVPEVVAPVVSVDTTLMDEIDGSTTSAWDDEDEAEAAEAAEAAAASPSASEDDKPKKRR
RRRRRRKNGNGDDNGQDMAGDQDGESADTADAPAEPAEAAAEAEAGEPAVQAEAEAEEKP
KRKRSTRSRSRAKTVKSDDEATAEGDVQEATAEAAPKDDTAEAEDAPKPKAKRTRTRKKK
APEPEAEAQEAEAQPEGQAAPEAETTAQPEPAAAEPQAEASEEAQAPKAPAKPRRTRRKA
AEVIAEVVGTADETTEAAPAAEPVAETAQPEPAPEPVAEVSEAEPVVETATAEPAVETVA
EASAEDDKPKKRGWWSLGR
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgatgccacccacgcggaagagacccgcgtcgtggtggtg
gacggaaacaaggttgaggagttcgactttgaatccgaaaacaagcgccagcttgcagga
aatatctatctagccaaagtcacgcgggtcgaaccctcgttgcaggcggctttcgtggac
tatggcggcaaccgccatggtttcctcgccttttcggaaattcaccccgattattaccag
atccccatcgccgaccgtaaggcgctgatggaggaagaggcggcccttgctgccgaggaa
gaagaagaacgcgagcgcccgaaaaagcgcacgcgcggccggtcgcgccgcaagcccagc
caggccgagaacgccaagtccgatgacgaggtgatcacggcggaaccgtcccgcgaagtc
agcggcatggaaaccatcgacctgggcgacgacaccgaagagggcgcaccgggcgaaggc
ctgtccccgatggagacggtgcacgaaacccccgtcgccgaccccgatgagcttgccgcc
gaaaccaccgccgaaaccaccgccgaggccgaggcccccgcagcagaagccgaggcagcc
cgtcccgaggccgccgaagaggcggatgatgacggcgacgacgaagcagacgatggcgac
gacgacgaagcagacgccgccagcaaggacgaatccatcgaatccgtgtcggacgacgac
tcggaagaagacatccgtccgcgccgcaagccgcgtccgcgcaaatacaagatccaggaa
gtcatcaaggttcgtcagatccttctggtgcaggtcgtcaaggaagagcgcggcaacaag
ggcgcggccctgaccacctatctgtcgctggccggtcgttactgtgtcctgatgccgaac
accgcgcgtggcggtggcatcagccgcaagatcaccaatgccgccgaccgctccaagctc
aaggaaatcgcgggcgagatcgacgtgcccaagggcgcgggcctgatcatccggaccgcc
ggtgccaagcgcaccaagaccgagatcaagcgcgactacgaataccttcagcggctgtgg
gaacagatccgcgaactgacgctgaaatccagcgccccggcgaagatctatgaagagggc
gacctgatcaaacgctcgatccgcgatttgtacaaccgcgagatcgacgaagttctggtc
gagggcgagcgcggctaccgcatcgccaaggacttcatgaagatgatcatgccgtcccac
gccaagaacgtgaaacactatgtcgaccagatgccgctgttcgcgcgccaccaggtcgaa
agctacctgtcgggcatgttcaacccgacggtccagctgaaatccggcggttacatcgtg
atcggcgtgaccgaggcgctggtggccatcgacgtcaactcgggccgtgccaccaaagag
ggcagcatcgaggaaaccgcgaccaagaccaacctggaggccgccgaagaggtagcccgc
cagctgcgtctgcgtgaccttgccggcctgatcgtcatcgacttcatcgacatggacgag
cgcaagaacaacgccgccgtcgagaaaaagctgaaagacaagctgaagaccgaccgcgcc
cgcatccaggtgggccggatcagcggctttggcctgcttgaaatgtcccgccagcgtctg
cgcccgggcatgatcgaggcaacgacagcgccgtgcccctcgtgccacggcacgggtctg
atccgctcggacgacaacatggccctgcaggtgctgcgccagatcgaggaagaaggcacc
cgccgccggtcgcgcgaagtgctggtgaaatgcccggtttcgatcgccaactacctgatg
aaccagaaacgcgaacacatcgcccagatcgaatcgcgctacggcatgtccgtgcgcatc
gaaggcgacgcgcatctggtggcgcccgattacaccatggaaaagttcaagaccgcgacc
cgcgccgtgcccgaagtggtggcgcctgtcgtgtcggtggacaccaccttgatggatgaa
atcgacggcagtaccacatcggcctgggatgacgaggacgaagccgaagcggcagaagcc
gcagaggcagccgcggcaagcccgtccgccagcgaagacgacaagccgaaaaagcgccgt
cgtcgtcggcgtcgtcgcaagaacggcaacggcgatgacaacggtcaggacatggccggc
gatcaggacggcgagagcgccgatacggctgatgcccccgccgagcctgccgaagcagca
gccgaggccgaagccggcgaacctgcggtccaagccgaggccgaggccgaggaaaagccc
aagcgcaaacgcagcacccgttcgcgctcgcgcgccaagacggtgaaatccgacgacgag
gcaaccgccgagggcgacgtgcaagaggcaaccgccgaggccgcgcccaaagacgacacc
gccgaggcagaggacgcgcccaaacccaaggccaagcgcacccgcacgcgcaagaaaaag
gcccccgagcccgaggccgaagcccaggaggcagaagcccagcccgaaggccaggccgca
cccgaggccgaaaccacggcgcagcccgaacccgcagcggctgaaccgcaggccgaggcc
tccgaagaggcgcaggcgcccaaggctccggccaaaccgcgccgcacccgccgcaaggcc
gccgaggtgatcgccgaggtcgtcggaaccgccgatgaaacgaccgaagccgcgcccgcc
gcagagccggtggccgagacggcccagcccgaaccggcccctgaaccggtcgccgaggtc
agcgaagccgaacccgtggtcgaaacggccacagccgagcccgccgttgaaacggtggcc
gaggccagcgccgaagacgacaagccgaaaaagcgcggctggtggtccctggggcgctaa
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