Pacificoceanicola oceani: QF118_16415
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Entry
QF118_16415 CDS
T09169
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
try
Pacificoceanicola oceani
Brite
KEGG Orthology (KO) [BR:
try00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
try03032
]
QF118_16415 (topA)
03400 DNA repair and recombination proteins [BR:
try03400
]
QF118_16415 (topA)
Enzymes [BR:
try01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
QF118_16415 (topA)
DNA replication proteins [BR:
try03032
]
Prokaryotic type
DNA Topoisomerases
QF118_16415 (topA)
DNA repair and recombination proteins [BR:
try03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
QF118_16415 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WGW03490
UniProt:
A0ABY8QG35
LinkDB
All DBs
Position
complement(3411515..3414232)
Genome browser
AA seq
905 aa
AA seq
DB search
MPVVVVESPAKAKTINKYLGPDYTVLASYGHVRDLPPKDGSVDTEHDFEMKWEVGNDSRK
HVAAIAEALKNDDTLILATDPDREGEAISWHLKEALTKRRSIKKTTHVSRVTFNAITKKA
VTEAMQNPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVE
REMEIEAFKPREYWQVKAQFTTPRGPTYEARLTTLAGKKLDKFDLANATDAEMAVSAVEK
RPLTVTSVEAKPASRNPSAPFMTSTLQQEASRKFGMGARQCMNAAQRLYEAGHITYMRTD
GIDMAPEAVQAARDAIKDRYGADYVPSSPRIYKNKAKNAQEAHECIRPTDMTKDASMLKL
SEDDQRKLYDLIWKRTLAAQMEGARLERTTVEIGSEDGQVGLRATGQVVTFDGFLKVYEE
GRDEPVEDGDENRLPQIMQGEPAKFSAGAMQQAYDKAGEKADSVVDTDAPGKMQKTSAAV
LAANGAVLALQSHTQPPPRYTEATLVKKMEELGIGRPSTYASVITTIQDREYVRKEQNRL
FPEDKGRIVTIFLLNFFKRYVEYDFTAALEDELDQVSAGAEDYKELLAKFWRDFSAAIAE
TSDLRIAQVLDVLDDALAPQLYPPREDGTDPRVCPKCGLGQLHLKTSRDGGFVGCGNYPE
CTYTRPITGEGADGEERLLGTDDGDEIWLKTGRYGPYLQRGETEPGSKKKPKRANLPKDR
YKKPLPGWAPDDMTLEKAVTLLTLPRTVGTHPDGGDIKAALGPFGPYIMHQRPDEEKPVY
VNLKELIEVFEIGMNHSVELLAEKRANPGRGRGAAAKALRDLGEHPQDGGPIQIMEGKYG
PYVKWQKVNATLPKGVEPADVTIDAAVKLIEEKAGKSGKKKAAPKKSAAKKPAAKKPAAK
PKAKK
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcgttgtcgtcgaatcccctgctaaagccaagacaatcaacaagtatcttggc
cccgactacacggttctggcctcgtatgggcatgtgcgggacctgccgccaaaggacgga
tcggtcgacaccgagcacgacttcgagatgaaatgggaggtcggaaacgactcgcgcaaa
catgtcgcggccatcgccgaggcgctcaagaatgacgacaccctgatcctggcaaccgac
cccgatcgcgaaggcgaagcgatctcctggcacctcaaggaggcgctgacgaaacgccgc
tcgatcaagaagacgacccatgtcagccgcgtcaccttcaacgccatcaccaagaaggcg
gtgaccgaggcgatgcagaacccgcgcgacatcgacgtgccgctggtcgatgcctatctg
gcccgccgcgcgctggattatctggtcggcttcaacctgtcgccggtgctgtggcgcaag
ctgcccggcgcgcgcagcgcggggcgggtgcaatcggtctgcttgcgcctgatcgtcgag
cgcgagatggagatcgaagccttcaagccgcgcgaatactggcaggtcaaggcgcagttc
accacgccgcgcggcccgacctatgaggcccgtttgacaacccttgccggcaaaaagctg
gacaagttcgatctggccaatgcgaccgacgcggaaatggccgtcagcgccgtcgaaaag
cgccccctcacggtcaccagcgtcgaagccaagcccgccagccgcaaccccagcgcgccg
ttcatgacctcgaccctgcaacaggaagccagccgcaaattcggcatgggcgcgcggcag
tgcatgaacgcggcgcagcgcctgtatgaggccgggcacatcacctatatgcggaccgac
ggcatcgacatggcgcccgaggcggttcaggccgcgcgcgatgcgatcaaggaccgctat
ggcgcggactatgtcccctccagcccgcgcatctacaagaacaaggccaagaacgcgcaa
gaagcgcacgaatgtatccgcccgacggatatgaccaaagacgccagcatgctgaagctg
agcgaggacgaccagcgcaagctgtacgacctgatctggaaacgcaccctggccgcccag
atggaaggcgcccggctggaacgcaccaccgtcgagatcggcagcgaggacggccaggtt
ggcctgcgcgccaccggtcaggtcgtgacctttgacggctttctcaaggtctacgaagag
ggccgcgatgagccggtcgaggatggcgacgaaaatcgcctgccgcagatcatgcagggc
gagccggcgaaattctctgcgggcgcgatgcagcaagcctatgacaaggctggcgaaaag
gcggattcggtggttgacaccgatgcccccggcaagatgcagaaaaccagcgccgcggtg
ctggcggccaatggcgcggtgctggcgctgcaaagccacacccagccgccgccgcgctat
accgaggcgacgctggtcaagaagatggaagaactgggcatcggtcggccatcgacctat
gccagcgtgatcaccacgatccaggaccgcgaatatgtccgcaaggaacagaaccgcctg
ttccccgaggacaagggccgcatcgtcacgatcttcctgctgaacttcttcaaacgctac
gtcgaatatgatttcaccgccgcgctcgaggatgagctggaccaggtgtcggccggggcc
gaggattacaaggaactgctggccaagttctggcgcgatttcagcgcggcgattgccgaa
acctcggacctgcggatcgcgcaggttctggatgtgctggacgacgcgctggcgccccag
ctgtaccccccgcgcgaggatggcaccgacccgcgcgtctgccccaagtgcgggctgggc
caattgcacctgaaaacctcgcgcgatggcggctttgtcggctgtggcaactatcccgaa
tgcacctatacccgcccgatcaccggcgagggcgcagatggcgaagaacgcctgctgggc
accgatgacggcgacgagatctggctcaagaccgggcgttatggtccctatctgcaacgc
ggagagaccgagccgggatcgaagaaaaagcccaagcgcgccaaccttcccaaggaccgc
tacaagaaacccctgccgggctgggcacccgacgacatgacgctggaaaaggcggtcacg
ctgctgaccttgccgcgcaccgtgggcacccatcccgacggcggcgacatcaaggcggcg
cttggccccttcggtccctacatcatgcaccagcgcccggacgaggaaaaacccgtctat
gtgaacctcaaggaactgatcgaggttttcgagatcggaatgaaccactcggtcgagctt
ttggccgaaaagcgcgccaaccccggtcgcggccgcggcgcggcggccaaggcactgcgc
gaccttggcgaacacccgcaagacggcggtccgatccagatcatggagggcaaatacggc
ccctacgtgaaatggcaaaaggtcaacgcgacccttcccaaaggggtcgaaccggcggat
gtcaccatcgacgccgcggtcaagctgatcgaggaaaaggccggcaagagcgggaaaaag
aaggcggcgcccaagaaatccgctgccaagaaacctgccgccaaaaagcccgccgccaag
cccaaggccaagaagtga
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