Tropicibacter oceani: QF118_17265
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Entry
QF118_17265 CDS
T09169
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
try
Tropicibacter oceani
Pathway
try03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
try00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QF118_17265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
try03019
]
QF118_17265
03009 Ribosome biogenesis [BR:
try03009
]
QF118_17265
Enzymes [BR:
try01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QF118_17265
Messenger RNA biogenesis [BR:
try03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QF118_17265
Ribosome biogenesis [BR:
try03009
]
Prokaryotic type
rRNA helicases
QF118_17265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
WGW03646
UniProt:
A0ABY8QI17
LinkDB
All DBs
Position
3605456..3607687
Genome browser
AA seq
743 aa
AA seq
DB search
MISTLSDALAERGYDQLTDVQEAVTAPELSEADLLVSAQTGSGKTVGFGLAIAPTLLGED
ARFGPPAAPLALIVAPTRELAMQVQRELEWLFGKAGGRIAACIGGMDARQERRTLERGAH
IVVGTPGRLRDHIMRGALDLTDIRAVVLDEADEMLDLGFREDLEYMLGEAPQDRRTLMFS
ATVSDSIAKMAEQFQRDAQRISTITGKAQHADIAYQAIQVTQRDAEHAIINLLRFHDAPN
AIVFANTRATVARLTARLANRGLSVVSLSGELSQDERSHALQALRDGRAKVCVATDVAAR
GIDLPNLELVIHADLPQNTEALLHRSGRTGRAGRKGISALIVPDKISKKAARLLKWAKIE
AEWTHAPGPEDILAKDEARLLADPVWNTAPTEQEAGFAAKLLAEYGAEKVAAACLSFFRA
GLSAPEELNQPEARAPREDRGDFGPSAWFSLSIGRDKGAEARWLLPLILRVGNFEKANIG
RIRVQDQETFVELSESVAADFLGSLGPDGLLENDVFGRQLDAEPAEIRQPPAHRGRPAQP
HRKGPGGDRGDRGDRGDKKPWQGKPRSDDREKPRAPRPDRADKPARPAGEAATAHPARSE
RPARDDKPRDAKPYGKPAGKPAAKRDGKPFGKPEGKPAGKRDAKPYGKPEGKPAAKRDGK
PFGKPEGKSFGKSEGKPFDKKGGKPAGKPGAKPGKPRPANAMDTSVRMDRPGSKGPGSKG
PGKGKPVNRGGDSPLRRKPKSDR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgatctctaccctttctgacgccctcgccgagcgcggctatgaccaattgaccgacgtc
caagaggccgtcaccgcgcccgagttgtcagaggcggaccttctggtttcagcccaaacc
ggatcgggcaagaccgtgggctttggcctggccatcgcaccgaccttgctgggcgaagac
gcccgtttcggaccgcctgccgcgccgctggcgctgatcgtggcgccgacgcgggaactg
gccatgcaggtgcagcgcgaacttgaatggctgttcggcaaggccggcggtcgcatcgcc
gcctgtatcggcggcatggacgcccgccaggaacggcgcacgctggaacgcggcgcgcat
attgtcgtcggcacccccggacgcctgcgcgatcacatcatgcgcggcgcgctggatctg
accgacatccgcgccgtggttctggacgaagccgacgaaatgctggacctgggatttcgc
gaggacctggaatacatgctgggcgaggccccgcaggaccgccgcacgctgatgttctcg
gccacggtatcggattcgattgccaagatggccgaacagttccagcgcgacgcgcagcgg
atttcgaccatcaccggcaaggcgcagcacgccgatatcgcctaccaggcgattcaggtc
acccagcgcgatgccgaacacgccatcatcaaccttctgcgctttcacgatgcgcccaat
gccatcgtctttgccaacacccgggccaccgttgcccgcctgaccgcccgactggccaat
cgcgggttgtccgtggtcagcctgtctggcgagctgtcgcaggatgaacgcagccacgcc
ctgcaggcgctgcgtgacggccgcgccaaggtctgcgttgccaccgacgtcgccgcgcgc
ggcatcgacctgcccaacctcgaactggtgatccatgccgatctgccgcaaaacaccgag
gcgctgctgcaccgttcgggccgcaccggccgcgccgggcgcaagggcatctcggcgctg
atcgtgccggacaagatttccaagaaggccgcgcgcctgctgaaatgggccaagatcgag
gccgagtggacccacgcccccggccccgaggacatcctggccaaggacgaggcccgtctg
ctggccgatccggtctggaacaccgcccccaccgagcaggaggcaggctttgccgccaag
ctgctggccgaatatggcgccgaaaaggtcgccgccgcctgcctcagctttttccgcgcc
ggcctgtccgcccccgaagagctgaaccagcccgaagcccgcgccccgcgcgaggaccgc
ggcgatttcggcccctcggcctggttttccctgtccatcggccgcgacaagggcgccgag
gcgcgctggcttttgccgctgatcctgcgtgtcgggaactttgaaaaggccaatatcggg
cgcatccgcgtgcaggaccaggaaacttttgtcgaattgtccgaaagcgtggccgccgat
ttccttggcagccttggcccggacggcttgcttgaaaacgatgtctttggccgccagctg
gacgccgagcccgccgagatccgtcaacccccggcccatcgcggtcgccctgcgcagccg
caccgcaaggggcccggcggcgatcggggtgatcgtggtgatcgtggcgacaagaagccc
tggcagggtaagccccgctcggacgatcgcgaaaaaccccgcgccccgcgccccgaccgc
gcggacaagcccgccagaccggccggcgaagcggccaccgcccatcccgcgcgcagcgaa
cgtcccgctagggacgacaaaccgcgcgacgccaagccctatggcaaaccggcgggcaag
cccgcggcgaaacgggacggcaaaccctttggcaagcccgaagggaaaccggccggcaag
cgcgacgcgaaaccctatggaaaacccgaaggcaaacccgccgccaagcgcgatggcaaa
cccttcggcaagcccgagggaaagtcgttcggcaaaagcgaaggcaagcccttcgacaag
aagggcggcaagcctgccggcaaacccggcgccaagccgggcaaaccgcggccggccaat
gccatggacacttcggtgcgcatggaccgcccgggcagcaagggtcccggcagcaagggt
ccaggcaaaggcaaaccggtcaaccggggcggcgattcccccctgcgtcgcaaacccaaa
agcgaccgttaa
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