Tropicibacter oceani: QF118_18260
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Entry
QF118_18260 CDS
T09169
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
try
Tropicibacter oceani
Pathway
try02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
try00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QF118_18260 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
try03021
]
QF118_18260 (rpoD)
Transcription machinery [BR:
try03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QF118_18260 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Med21
FTCD_C
DUF1451
Motif
Other DBs
NCBI-ProteinID:
WGW03835
UniProt:
A0ABY8QH30
LinkDB
All DBs
Position
complement(3804870..3806852)
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AA seq
660 aa
AA seq
DB search
MAAKDNDDAKPQDQDDDVSLDMSQAAVKKMIAEARERGYITYDQLNSVLPPDQVSSDQIE
DVMSMLSEMGIQVTEDDEEGDDDDKGSTDLVETKKAGEVTLAGSGNEKLDRTDDPVRMYL
REMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWREELLNEDILLRDVI
DLETTFSGQMGEDGEVEEPVVDTSGVEVTKEKSDGPELDADGNPISQDDDDDEDEQANMS
LAAMETALKPRVLETLDRIAQDYEELAEMQDSRISATLNEDDSFSAVDEERYQKLRGEIV
ELVNELHLHNNRIEALIDQLYGINRRIMQIDSSMVKLADQARINRREFVEEYRGHELDPN
WLERMGDKSGRGWQMFIERSSDKVEELRADMAQVGQYVGLDISEFRRIVNQVQKGEKEAR
QAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEK
VRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLSSLTP
REERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaggacaatgacgacgccaagccccaggatcaggacgatgacgtaagtctc
gacatgagccaggccgcggtcaagaagatgatcgccgaggcccgtgagcgcggctatatc
acctatgatcagctcaattcggtgctgccgcccgatcaggtcagctcggaccagatcgag
gacgtgatgtcgatgctgtccgaaatgggcatccaggtcaccgaagacgacgaagagggc
gacgacgacgacaagggctcgaccgatctggtcgaaaccaagaaggcgggcgaagtcacc
cttgccggcagcggcaatgaaaaactggatcgtaccgacgatccggtgcgcatgtacctg
cgcgaaatgggcagcgtcgagttgctgtcccgcgagggcgaaatcgcgatcgccaagcgc
atcgaggccggccgcaacaccatgatcctggggctgtgcgaaagcccgctgacctttcag
gccatcaccatctggcgcgaggaacttctgaacgaagacatcctgctgcgcgatgtgatc
gaccttgaaaccaccttttccggccagatgggcgaggatggcgaggtcgaagaaccggtc
gtcgacacctcgggcgtcgaagtgaccaaggaaaagtccgacggcccggaactggacgcc
gacggcaacccgatttcccaggacgatgacgacgacgaagacgagcaggcgaacatgtcg
cttgccgcgatggaaaccgcgctgaaaccgcgggttctggaaacgctggaccgcatcgcc
caggattacgaagaactggccgaaatgcaggacagccggatttcggcgaccctgaacgaa
gacgacagctttagcgcggtcgacgaggaacgctatcaaaagctgcgcggcgagatcgtc
gagctggtgaacgaactgcacctgcacaacaaccggatcgaggcgctgatcgaccagctg
tacggcatcaaccgccggatcatgcagatcgacagctcgatggtgaagctggcggatcag
gcgcgtatcaaccgccgcgaattcgtcgaggaataccgcggtcacgagttggacccgaac
tggctggagcggatgggcgacaagtccgggcgcggctggcagatgttcatcgaacgcagc
agcgacaaggtcgaagagctgcgcgccgacatggcgcaggtcggccagtatgtcggtctc
gacatctctgaattccgccgcatcgtgaaccaggtccagaagggcgaaaaagaagcccgt
caggcgaaaaaggaaatggttgaggcgaacctgcgcctggtcatctcgatcgccaagaaa
tacaccaaccgcggtctgcagttccttgacctgatccaggaaggcaacatcggcctgatg
aaggcggtggacaagttcgaataccgccgcgggtacaagttcagcacctacgcgacatgg
tggatccgtcaggcgatcacccggtccatcgcggatcaggcgcgcaccatccgtattccg
gtgcacatgatcgaaacgatcaacaagctggtgcgcaccggccgccagatgctgcacgag
atcggccgcgaaccgaccccagaagagctggcagaaaagctgcagatgcctttggaaaag
gttcgcaaggtgatgaagatcgccaaggaaccgatttcgctggaaacgcccatcggcgac
gaagaggacagccagcttggcgatttcatcgaggacaagaacgcggttctgcccctcgac
agcgccatacaggaaaacctcaaggaaaccacgacgcgggttctgtcttcgctgaccccg
cgcgaggaacgtgttttgcggatgcgctttggcatcggcatgaacaccgaccacaccctg
gaagaggtcggccagcagttcagcgttacccgcgaacgcatccgccagatcgaggccaag
gccctgcgcaagctcaagcatccgtcgcgctcgcgcaagctgcgcagcttcctcgatcag
taa
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