Treponema vincentii: GWP43_01225
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Entry
GWP43_01225 CDS
T06435
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
trz
Treponema vincentii
Pathway
trz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
trz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GWP43_01225 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trz03400
]
GWP43_01225 (mfd)
Enzymes [BR:
trz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GWP43_01225 (mfd)
DNA repair and recombination proteins [BR:
trz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GWP43_01225 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Phytase
Motif
Other DBs
NCBI-ProteinID:
QHX42298
UniProt:
A0A6P1XXU0
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All DBs
Position
complement(273261..276875)
Genome browser
AA seq
1204 aa
AA seq
DB search
MKEHTLQDSIRSWKTMQDAFSSLREERFPYHIHGLSGGIFAFFLAEYVRHFNANLCIVVP
TEKEIEELRADLDIAGLQAQVLPWWGNMAYRPVQNSAPVFAERAQVLAELCAGAPVSGSA
VSGSVSSGLTSKAVSGLAAPNSAISNSTANTVTVMTQRAFLTPVPPPDYLKTLTCTLYKG
KEIDTEKIASMLIQWGYTRVPRVSVRGEFALRGEVLDICAAANKGSQHTAYRIQFDFTTI
EKIKSFDMHTQASVEEFDSLTLYPMKEVIWDDERIAALERNLSQMPEFTAEGTEKLIAHL
KEQRAFDGEELFYPLCFEKPASVLDYLEYLHGGASTPRNTGGASRHQGTGGAAKPAVLLY
MDYDRQRNAVEALEREYHGLYNKITRAIDDDIKHNLLITEYPMPQRLLLPFAELTESYPQ
SLFLRTLKESDETGASIVFNCDPPRSFFGNIVYLKEELTHLQQEGWRIFVFAESDAQALR
IGELLKDIKATVLPLTLSSGFGIPELKILVIQENEIFGRRRRIPKSVKQVKSSVIDTFVE
LNPGDYVVHVNYGIGQFKGIERVKTLGHERDYINLLYAQDETVFIPIEQANLVQRYIGNE
GEAPRLDIIGSKAWENRKNKVKKSVEDIADKLIDLYSRRKAAAGFAFAKDNEWQTAFEAA
FPYEETEDQLTCIADVKADMEKPIPMDRLICGDVGYGKTEIAMRAAFKAVMSGKQAAFLA
PTTILAEQHFDTFQERFQKFPVKLARLSRFVPKAEQKKVLTQLKNGELDIVIGTHRVIQK
DVQFKDLGLMIVDEEQRFGVKDKERLKQMKTNIDCLSLSATPIPRTLHISLLKIRDMSLL
TTPPQNRRPVETVISPFDPERIAQAIRFEVDRGGQVFYLHNRVESLEETRYKIQQLIPEV
LIDIAHGQMSANELEDIFRRFNMGGFHVLIATTIIENGIDIPNANTIIIDRADMYGVSQL
YQLRGRVGRSDRKAYAYLLYPENKALSEVAMKRLQVISDFTELGSGFKIAMKDMEIRGAG
NLLGKEQSGDIYSVGFDLYLRLLEEAVERLQNAGYEPETEPVIELEYTGFIPDSYIRVPE
TKMEIYKKIAAVRTAEELDRLYAELSDRFGPVPEEAESLLSLAEIKIICAKLAIASLKER
NGTVRITFAKVSKISIDKLLRMIKESAGRVKLDAKQPNVIMLETGSIGLKEKSEFISEKL
NQLI
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacacacattacaagacagtatccgctcatggaaaaccatgcaagacgctttt
tcctctttgagggaagagcgttttccgtatcatatacacggcctttcaggcggtatattc
gcttttttcttagccgaatatgtccggcattttaacgctaacctctgtatcgtcgtaccg
acggaaaaagaaatagaagagttacgcgcagacctcgatatcgcgggattgcaagctcag
gttttgccgtggtggggcaatatggcatatcggcccgtacaaaactccgcgccggtattt
gcggagcgggctcaagttttagccgaactctgcgcaggggcaccggtatccggttcggcc
gtctccggttcggtatcgtccggcttgacgtcaaaggcggtgtccggattggcggcacca
aactcagcgatatcaaactcgaccgcaaacacggtaacggttatgacccagcgggcattt
ctaacgccggttccgccgcccgactaccttaaaacactcacctgtactctctataaaggc
aaggaaatcgatacggaaaagatagcctcgatgctgatacagtggggctatacgcgggtg
ccgcgggtaagcgtccggggcgagtttgcgctccgcggtgaggtactcgatatctgcgcc
gccgctaacaaaggttcgcagcacaccgcctatcgtatccaattcgactttactactatc
gaaaagataaaatccttcgatatgcacacgcaggcctcggttgaagaatttgacagcctg
acgctctatccgatgaaagaggttatctgggatgatgagcggatcgccgcgctcgaacgg
aatttatcgcagatgcccgaatttacggccgaaggtacggaaaaactgattgcgcactta
aaagaacagcgagcctttgacggtgaagagcttttttatccgctctgttttgaaaaacct
gcaagcgtccttgattatcttgagtatctgcacggcggcgcatcaacaccgcgaaatacc
ggaggcgcttcaaggcatcagggcacaggcggcgctgcgaaacctgcggttcttctgtac
atggattacgaccggcagcggaacgcggtggaggcgctggagcgggagtatcacggctta
tataacaaaatcacccgcgcaatcgacgatgacatcaagcataatcttttgattaccgaa
tatcccatgccgcagcgccttttgctgcccttcgcggagttgaccgaaagctatccgcaa
agtcttttcctccggacgctgaaagaatcggatgaaaccggagcgtcgattgtgtttaac
tgcgacccgccgcgcagttttttcggcaatatcgtgtatctaaaagaagaattaacgcat
ttgcagcaggaaggatggcgtatttttgtgtttgcggaaagcgatgcgcaggcgctccgt
atcggtgagttgctcaaggatattaaagccaccgtgctgccgctcacactttcttccggc
ttcggcatccctgagctgaaaatactcgttattcaggaaaacgaaattttcggcaggcgg
cggcgcatcccgaaatcggttaagcaggttaaaagctcggttatcgatacctttgtggaa
ctcaaccccggcgactatgttgtccacgtcaactacggtatcggacagtttaaggggatt
gagcgcgttaaaacgctggggcatgagcgcgactatatcaatctgctgtacgcgcaggac
gaaacggtgtttattccgatcgagcaggcgaacctcgtgcagcggtatatcggcaatgaa
ggcgaagcgccgcggctggatatcatcgggtctaaggcgtgggaaaaccggaaaaacaag
gttaaaaaatcggttgaagatattgccgataaactcatcgacctatattcccgccgcaaa
gccgccgccggttttgcctttgcgaaagacaacgaatggcaaaccgcttttgaggccgcc
ttcccgtatgaggaaacggaagatcagctgacctgtattgccgatgtaaaggccgacatg
gaaaaaccgataccgatggatcggctcatctgcggcgacgtcggttacggtaagacggaa
attgcgatgcgggcggcatttaaagcggtgatgagcggaaagcaggctgcctttttagcc
ccgaccaccattctcgcggagcagcactttgatacctttcaagaacgctttcaaaaattt
ccggtaaaactggcacggctgtcccgctttgttcccaaggctgaacagaaaaaagtgctg
acccagctgaaaaacggagagcttgatatcgttatcggcacacaccgcgttatccaaaaa
gacgtacagtttaaagatttgggactgatgattgtcgatgaagaacagcgcttcggggtt
aaagacaaggagcgactcaaacagatgaagacgaatatcgactgcctctctttgagtgcg
acccccatcccgcgtaccctgcatatcagtctgttaaaaatccgcgatatgagcctttta
actacgccgccgcaaaaccgccgtccggtagaaaccgttatttctccgtttgaccccgaa
agaattgcgcaggcgatccgttttgaagttgaccgcggcggacaggtgttctatctgcat
aaccgcgtggagagcctcgaagaaacacggtataagatccagcagctcatccccgaagta
cttatcgatatcgcccacgggcagatgagcgcaaacgaacttgaagatattttccgccgc
ttcaacatgggcggctttcatgtcctcattgctactacgattatcgaaaacggtatcgac
atccccaatgcgaataccatcatcatcgaccgtgccgatatgtacggcgtttcgcagctg
taccaactgcgcggccgcgtcgggcgttccgacagaaaggcctatgcgtaccttctctat
cctgaaaacaaggcgttgtcggaggttgcgatgaagcggctgcaggttatctccgatttt
acggaactcggctccggctttaaaattgcgatgaaggatatggaaatccgcggcgcaggg
aatctgttgggaaaagaacagtcaggcgacatttattccgtcggctttgacctttacctt
cggcttttggaagaggcggtggaacggctgcaaaacgccggttacgagcctgaaacggaa
ccggtcatagagcttgagtacacgggctttatccccgacagctatatccgcgtgccggaa
acaaagatggaaatatacaaaaaaatcgccgccgtccgtaccgcggaagaactggatagg
ctctacgcggaactgtccgaccggttcggtcccgttccggaagaagctgaaagcctgctt
tctcttgctgaaattaaaattatctgtgcaaaacttgcaatcgcctcgcttaaagagcgg
aacggaaccgtgcgcatcacctttgcgaaggtctcaaagatttctatcgataagttgctt
cgcatgataaaagagtctgcgggacgggttaaactcgatgcaaagcagccgaacgtcatc
atgctcgaaaccggttccatcggcttaaaagaaaagagcgaatttatcagcgaaaaactc
aatcagcttatctaa
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integrated database retrieval system
