Treponema vincentii: GWP43_09545
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Entry
GWP43_09545 CDS
T06435
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
trz
Treponema vincentii
Pathway
trz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
trz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GWP43_09545 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trz03021
]
GWP43_09545 (rpoD)
Transcription machinery [BR:
trz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GWP43_09545 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QHX43640
UniProt:
A0A6P1Y2W7
LinkDB
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Position
complement(2037592..2039415)
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AA seq
607 aa
AA seq
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MIDISEDPIVIKLIAHAKERKTLTWDELTDLLPEKITSSEAMMDEILDMLEQEQIQVVDD
ASEETDDVFADELDEVELESEEQLFEEAELEPGNAPEFPKPEETHKKLLNNDREAIVDDP
IKLYLRDIGKENLLTAEQEVILSKAMEDGENIIKNAIRNSGVLISEVQMIAQKAFAKISS
SENNKPRKELSYEDAEKKRLRQSYGEQLKPIYSDIKAYILLKKKLYDKETLASFLDDEDL
QKTRKKILNYLQKIEFQTEEIEKISDHFLEAARKIREYRRRREKKQRQLGIRAYSDLRKL
GKRLAIPRERQKLEEELGMTANDIRDIYTHIQTLIRKVRKIEYDFEAPTEDIIALAKEIR
HGHAMLKKAKDKLINANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYK
FSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLMQKFGREPTDEEIAAQ
LGWNVERVKQVKNVAREPISLETPIGEEEDSSLGDFIEDKDVENPSNLTEYILLQEQLRG
VLSCLPLREQEVLKMRFGLDEGYALTLEEVGLYFNVTRERIRQIEAKALRRLRHPKQSCK
LKDYLDT
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgatagatatctctgaagatcctattgttataaagttgattgcccatgcgaaggaacgt
aaaactttaacgtgggatgaactgaccgatttgttgcctgaaaaaataacttcatccgag
gctatgatggatgaaattctggatatgcttgagcaagagcagatccaagtggttgatgat
gcatctgaagaaacggacgatgtgtttgcagatgagcttgatgaagtagagctcgaaagc
gaggagcagctgtttgaagaggctgaactcgaacctggaaatgcccccgaatttccaaaa
cccgaagaaacgcataagaagcttttgaataatgatagagaagcaattgtcgatgaccct
attaaactctatttacgtgatatcggtaaagaaaacttattgacggccgagcaggaagtt
attctgtcaaaagcgatggaagatggtgagaatatcatcaaaaatgcgataagaaactcc
ggtgtgctcatttccgaagtccagatgatcgctcaaaaagcttttgcaaaaatcagttct
tcagaaaacaataagccgcgcaaggaattaagctatgaagatgctgaaaaaaaacggctt
cgtcaatcgtatggcgaacaattaaaacccatctattccgatataaaagcatatatctta
ttaaaaaagaaactatacgataaagagacgctcgccagttttttagatgatgaagatctt
caaaaaacacggaaaaagatccttaattatttacaaaaaattgagttccaaacggaagaa
attgaaaaaatttcggatcattttttggaggcagcaagaaagatacgggagtatcggcgg
cggcgcgaaaagaaacaacgtcagctcggcatacgggcatactccgacttacgaaagctt
ggaaagcgacttgccattcctcgtgaacggcagaagctggaagaagagcttggtatgacg
gcaaacgatatccgcgatatttatacacatattcaaacgcttattcgtaaagtgcggaag
atcgaatatgattttgaagcgcctacagaagatattatcgcactggcaaaagaaattcgc
cacggtcacgcaatgttaaaaaaagcgaaggataagcttatcaatgcaaacctgcgcttg
gtcgtatcaatcgcaaaaaaatatactaatagaggattacactttttcgatctggttcag
gaaggtaatatcggcttgatcaaagcggttgaaaaatttgaataccgtaaagggtataaa
ttttcgacatacgcgacatggtggatacggcaggcaattacgcgttccatctccgatcag
gcgcgaaccatccgtgtgccggtacacatgattgaacagatcaataaggttacccgcgaa
tcgcggcagctgatgcagaagttcggtagagagcctaccgatgaagagatcgccgcgcag
cttggctggaatgtcgagcgggttaagcaggttaaaaatgtcgcgcgtgaacctatttca
ctggaaacgccgataggcgaggaagaagattcttcgctcggcgattttattgaagataag
gatgtcgaaaatccgtccaacttgacagagtatattttgttgcaagaacagctgcgtggc
gtattgtcgtgcctgccgttgcgagagcaagaagtgcttaaaatgcggttcggccttgac
gagggctatgcgctgacgctggaagaagtcggattgtactttaatgtaacgcgtgagcgt
atccgccaaattgaagcgaaggcattacgcaggctccggcatcccaaacagagttgcaag
ttaaaagattatttggatacatag
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