Terriglobus saanensis: AciPR4_0541
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Entry
AciPR4_0541 CDS
T01408
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tsa
Terriglobus saanensis
Pathway
tsa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AciPR4_0541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsa03400
]
AciPR4_0541
Enzymes [BR:
tsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AciPR4_0541
DNA repair and recombination proteins [BR:
tsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AciPR4_0541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
AAA_16
Zeta_toxin
AAA_22
DUF1474
Motif
Other DBs
NCBI-ProteinID:
ADV81376
UniProt:
E8V3W2
LinkDB
All DBs
Position
complement(659508..663140)
Genome browser
AA seq
1210 aa
AA seq
DB search
MILPFVREMVAELEHSEIFERLRRHLSGGSGRRRVSGLTFTARALYLPYMVKAGNAPALI
LVSDNKAAEALHQALLGTCELTGVLACEEVLRLPAHDVLPFENLSPHAEIQEARASTLWK
IATGQAKVVIAPLESACMRLFSKDFYAGLALELKRGEEYDTEMILAHLLKVGYTRVDVVE
MPGQVTLRGGIVDVYSPEMDRPVRIDFFGDEIESMRKFDPDTQRSSTPVDEAILLPLTET
PITEKLLNAVHTRLVRGGAAGAMIEGGEEPAELQSRVGQATIFPGWEFFAPVAGATSTIF
ELMGPYTRVFVEEPAMVKNQGERWWNKIEQRHERSAIGTLVVPEDIYISPWDLEDRLRVL
PGCDLDQLGAVDVLDVDNSALTEIEFATRPTPRFRGSIPAMVEQLKSLTLQDARVLIAAP
NQGEVERLATLLQEYQVPYRIGSRVQTSSGSATVYDESSYLAGDLRTPVIVKTAIANGVQ
VLDLDKATARMLVIFGAQDLNDDADVTARPVQRKSKTAAFISDFRDLTVGDYVVHVEHGI
AKYMGLRTIDQEGMPLELMILEFAEQAKLYVPLTRLDLIQKYRTADTGPAPELNKMGGAA
WAKTKARVKKAMQDMTAELLKLYAQRQSAEGFVFAPDNNLQREFEDAFDFNETDDQLSAI
ADIKRDMESTQPMDRLLCGDVGYGKTEVAMRAAFKAVQDSKQVAVLTPTTVLSFQHYQSF
KKRFARFPVNVEMISRFRTAKEQKKILEDVADGKVDILIGTHRLLSKDIAFQDLGLLVVD
EEQRFGVRHKERLKQMRAAIDVLAMSATPIPRTLHMSLLGLRDMSVIETPPKDRMAIQTI
VAKFDEKLVRTAIEMELERSGQIYFVHNRVETIYDLASQIRELVPHARVITAHGQMGEGE
LEKAMLAFMNYEFDVLCATSIIENGLDIPRANTIIINRADRHGLSELYQLRGRVGRANRR
AYAYLLIPPDNELTEVARRRLAALKEFSDLGAGFKIAALDLELRGAGNMLGGEQSGHIEA
IGFEMYTTMLQEAVAKMKGESAEERVAVQLNLGISLRIDADYIAEENQRLRMYKRIAGAQ
DSGVLADVRAEMIDRYGLLPETVTHLLAAAELRMECERLCVAQLDRKRIQIEENKQKVMR
EMLMVRFDQKAPIDPGAMMKLVSRSAKRGAQFTPQGVLRWPLSSSKAEEVISEARALLDE
ITVRPPVLHQ
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgatcctcccctttgtccgcgagatggtcgcggagctggaacattccgagatatttgag
cgtttacggcggcacttgagcggcggatcggggcggagacgtgtgtctggcctcacattt
acggcacgggcgctctatctgccctacatggtaaaggccgggaatgcccccgccctgatc
ctggtgagcgacaacaaggccgcggaggcgctgcatcaggccctgctggggacctgcgag
cttacgggcgtgctggcctgcgaggaagttctgcggctccccgcgcacgatgtgcttccc
tttgagaacctctccccgcacgccgagatccaagaggcgcgcgcctcgaccctctggaag
atcgcgaccgggcaggccaaggtggtcattgcgcccctggagtccgcctgcatgcggcta
ttttccaaggatttttacgccggattggcgctggagctgaagcgcggcgaagagtacgac
acggagatgatcctggcgcatctgctgaaagtcggctacacgcgcgtagatgtcgtggag
atgccgggacaggtgacgttgcgcggcggaatcgtggatgtgtattcgccggagatggac
agaccggtgcgcatcgacttcttcggcgatgagatcgagagcatgcggaagttcgatccc
gacacgcagcggtcgagcacgcctgtggatgaagccattctgcttccgctgacagagacg
ccgattacggaaaagctgttgaatgccgtgcacacgcgcttggtgcgcggcggcgctgca
ggagcgatgatcgaaggcggcgaagaaccagcggaacttcagtctcgcgtgggacaggcg
acgatctttccgggatgggagttctttgctccggtagcgggggctacttcgacgatcttc
gagctgatggggccgtacacgcgcgtcttcgtggaagagcctgcgatggtgaaaaaccag
ggcgagcgctggtggaacaagatcgaacagaggcacgagcgcagcgcgattggcacgctg
gtcgtgccggaagatatttacatctcgccgtgggacctggaagaccgcctgcgtgtcctg
ccgggctgcgatctcgaccagcttggcgcggtggatgtgctggacgtcgacaactccgcg
ctgacagagatcgagtttgcaacacgcccgactccgcgcttccgcggatcgattccggcg
atggtggaacagctaaagtctcttacgctgcaggacgcgcgtgtgctgatcgccgcgcca
aatcaaggtgaagtagagcgtctggcaacgctgctgcaggagtaccaggtgccgtatcgc
atcggcagccgcgtacagacgtcgagcggaagcgcgacggtctatgacgaatcgagttac
ctggcgggcgatctgcggacgccggtgatcgtgaagacggcgattgcgaatggcgtgcag
gtgctcgatctcgacaaggccacggcgcggatgctcgtgatctttggcgcgcaggacctg
aacgacgatgccgatgtcacggcgcgtccggtgcagaggaaatcaaagacagcggcgttc
atctcggacttccgcgatctcaccgtaggcgactacgtagtgcacgtggagcacggcatt
gcgaagtacatgggtctgcgcaccatcgaccaggagggcatgccgcttgagttaatgatc
ctggagtttgccgagcaggcgaagctgtacgttcccctgacgcgactggacctgattcag
aagtacaggaccgccgacacgggtcccgctccggagctgaacaagatgggcggcgcggcg
tgggcgaagacgaaggcccgcgtcaagaaggccatgcaggacatgaccgccgaactgctg
aagctgtacgcgcagcggcagtcagcagagggctttgtctttgcgccggacaacaacctg
cagcgcgagttcgaggatgcctttgacttcaacgagacggacgatcaactctccgccatc
gcggacatcaagcgcgatatggagagcacgcagccgatggatcgcctgctctgcggcgat
gtcggctacggcaagaccgaagtagccatgcgcgccgcgttcaaggcagtacaggattca
aagcaggtcgcggtactgacacccaccaccgtgctgagctttcagcactatcagtcattc
aagaagcgtttcgcgcgcttccctgtaaacgtggagatgatctcgcgcttccgcacggca
aaggaacagaagaaaatcctggaagatgtcgccgacggtaaggtggacatcctgatcggc
acgcaccgcctgctctcgaaggacattgcatttcaggatctcggtctgctcgtggtcgat
gaagagcaacgcttcggcgtgcggcacaaagaacgattgaagcaaatgcgcgcagccatc
gatgtactggccatgagcgccacgccgattcctcgaacgctgcatatgtcgctgctcggc
ctgcgtgatatgagcgtgattgagacgcctccgaaagaccgcatggcgatccagaccatc
gttgcgaagttcgacgaaaagctggtgcgcacagcgattgagatggagctggaacgtagc
gggcagatctacttcgtccacaatcgcgtggaaacgatctacgatctcgcgtcgcagatt
cgcgaactcgtgccgcatgcgcgcgtgatcacagcgcatggacagatgggtgaaggcgag
ttggagaaagcgatgctcgcgttcatgaactacgagttcgacgtgctctgtgcgacgagc
atcatcgaaaacggcctggatattccgcgtgccaacacgatcatcatcaaccgcgccgac
aggcatggtttgagcgagctataccagttgcgcggacgtgtgggacgcgcgaaccggcga
gcgtatgcgtatctgctcatccctccggacaacgaactgacagaagtagcgcgacggcgt
ctggctgctctgaaagagttctccgacctcggtgcaggcttcaagatcgccgcgctggat
ctggaattacgtggcgccggaaacatgctcggcggcgagcagagcggacatatcgaagcg
attggttttgagatgtacacgacgatgctgcaggaggccgtggccaagatgaagggcgag
agcgcggaagagcgcgttgccgtccagctcaacctcggcatttctctgcgcatcgatgcg
gattacatcgcggaagaaaaccagcggttgcggatgtacaaacgcatcgcaggggcgcag
gactccggcgtactggccgacgtgcgcgcagagatgatcgaccgctatggacttttgccg
gagacggtaacgcatctgctggcggccgccgaactgcgcatggaatgcgaacggttgtgt
gttgcacaactggatcgcaagcgtatccagatcgaagagaacaagcagaaggtcatgcgc
gagatgctgatggtacgtttcgatcagaaagcgcccatcgatccgggcgcgatgatgaag
ctggtctcgcgctcggcaaagcgtggagcgcagttcacgccacagggtgtcttgcgttgg
cccctctcctcttcgaaggcggaagaggtgatctccgaggcgcgtgcgctgctggatgag
atcacagttcggccaccagttttgcaccagtaa
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