Thiothrix subterranea: HMY34_02340
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Entry
HMY34_02340 CDS
T07831
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tsb
Thiothrix subterranea
Pathway
tsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMY34_02340 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsb03019
]
HMY34_02340 (pnp)
03016 Transfer RNA biogenesis [BR:
tsb03016
]
HMY34_02340 (pnp)
Enzymes [BR:
tsb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HMY34_02340 (pnp)
Messenger RNA biogenesis [BR:
tsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HMY34_02340 (pnp)
Transfer RNA biogenesis [BR:
tsb03016
]
Prokaryotic type
tRNA degradation factors
HMY34_02340 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
KH_2
S1_2
Alpha_E1_glycop
Motif
Other DBs
NCBI-ProteinID:
QQZ27683
LinkDB
All DBs
Position
complement(478321..480414)
Genome browser
AA seq
697 aa
AA seq
DB search
MAKITKTFQYGNNTVTIETGEIAKQATAAVMITMDDTSVLVTVVGSKETVPGRDFFPMTV
DYQEKFYAAGRIPGGFFKREARATEEETLVARLIDRPLRPLFPEGFTHEVQLIATVVSMN
PSVSADIPALLGASAVMALSGMPFQGPIGAARVGYRDGGYLLNPSKEDLLTSELDLVIAG
TDCAVLMVESEAKELSEDVMLGAVMFGHEQMQVAINAIKELAAEVATPAWDWSAPVANTA
LADAVEAACSADLVEAFQIADKQARYARIHDVQSALVEKLAAKESETGFSADEIKGEFKN
AEKKVVRGSILDGKPRIDGRALDTVRKITVRVGVLPRTHGSALFTRGETQALVVTTLGTE
RDAQVIDAITGEYKDNFLFNYNFPPYSVGETGRFGSPKRREIGHGRLAKRGVKAMVPSTD
DFPYTIRCVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLIKEGERFAVLS
DILGDEDHLGDMDFKVAGSADGITALQMDIKITGITKEIMQQALVQAKAGRLYILGEMAK
GLEAPRDEVSEYAPRYVTMKINPDKIREVIGKGGETIRGITAATGASVDINDEGFIKIAA
IDAKAAYEARSMIEAITAEVELNKVYTGKVVRLMDFGAFVTILPGKDGLLHISQISDERV
ERVTDFVNEGDVVKVKVIEIDRQGRMRLSMKAVGEGE
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaatcaccaagactttccaatacggcaataacaccgtcactatcgaaaccggc
gaaatcgccaaacaagccaccgccgccgtcatgatcacgatggatgacaccagcgtgctg
gtcactgtcgtaggcagcaaagaaaccgtgcccggtcgcgatttcttcccgatgacggtt
gattaccaagaaaaattctacgccgccggtcgcattcccggtggtttcttcaagcgtgaa
gcgcgtgcgaccgaagaagaaacgctggttgcgcgtttgatcgaccgcccattgcgtccg
ctgttcccagaaggctttacccacgaagtgcaattgattgccactgtggtttccatgaat
ccatcggttagcgccgacattccggcattgctgggtgcatcagcggtcatggcactttcc
ggtatgccattccaaggccctatcggtgccgctcgcgtgggctaccgtgacggtggctat
ttgctgaatccatccaaagaagacctgcttacttctgagttggatttggtgatcgccggt
actgattgtgccgtgctgatggtcgaatctgaagcgaaagaactcagtgaagatgtcatg
ctgggcgcggtcatgtttggtcacgagcaaatgcaagtcgctattaatgccatcaaggaa
ttggcggcagaagtggcaactccagcatgggattggtctgcaccggtagccaatactgcg
ttggcagacgcggtagaagcagcttgctcggctgatctggttgaagccttccaaattgcg
gacaagcaagcgcgttatgcccgcatccacgatgtacaaagtgcattggttgagaaactg
gcagcgaaagaaagcgaaacgggtttcagtgcagacgaaatcaaaggtgaattcaaaaac
gctgaaaagaaagtcgtgcgtggcagcatcctcgatggcaagccccgtatcgatggtcgt
gcgctggataccgtgcgtaaaattaccgtgcgcgtcggcgtattgccgcgtactcacggt
tcagcactgttcacccgtggtgaaacacaggcgttggttgtgaccacgctgggtactgag
cgtgatgcacaggtgatcgacgcgattactggcgaatacaaagataacttcctgtttaac
tacaatttcccgccgtacagcgtgggtgaaacgggtcgtttcggttcaccgaagcgtcgt
gaaatcggtcatgggcgtttggcaaaacgtggcgtgaaagcgatggtgccaagcactgac
gatttcccgtacaccattcgttgcgtgtctgaaatcaccgaatccaacggttctagctcc
atggcgagcgtgtgcggcagttccttggcgatgatggacgcgggcgtaccgttgaaagcg
ccagtcgcgggtatcgcgatgggcttgatcaaagaaggcgagcgttttgcggtattgtcc
gacattctcggtgacgaagatcacctcggcgatatggactttaaagtagccggttctgcg
gacggtatcaccgcgctgcaaatggacatcaagatcaccggcattaccaaagaaatcatg
cagcaagcgttggtgcaagccaaagcaggccgtttgtacatcttgggtgaaatggcgaaa
ggtctggaagcgccgcgtgacgaagtatccgaatatgccccacgctacgtcaccatgaaa
atcaacccggacaaaatccgcgaagtcatcggtaaaggcggcgaaaccatccgtggtatc
accgctgcgactggcgcaagtgttgacatcaatgacgaaggtttcatcaaaattgcggca
attgacgccaaagctgcttatgaagctcgcagcatgatcgaagcgattactgccgaagtg
gaattgaacaaggtttacaccggtaaagtcgtgcgtctgatggacttcggtgcatttgtc
actatcttgccgggcaaagacggtttgctgcatatttcacaaatcagcgacgagcgcgtt
gagcgcgtgaccgatttcgtcaacgaaggcgatgtggttaaagtcaaagtcatcgaaatc
gaccgccaaggtcggatgcgtttgagcatgaaagcagtgggcgaaggcgagtaa
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