Thiothrix subterranea: HMY34_06500
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Entry
HMY34_06500 CDS
T07831
Symbol
ispA
Name
(GenBank) (2E,6E)-farnesyl diphosphate synthase
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
tsb
Thiothrix subterranea
Pathway
tsb00900
Terpenoid backbone biosynthesis
tsb01100
Metabolic pathways
tsb01110
Biosynthesis of secondary metabolites
Module
tsb_M00364
C10-C20 isoprenoid biosynthesis, bacteria
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
HMY34_06500 (ispA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tsb01006
]
HMY34_06500 (ispA)
Enzymes [BR:
tsb01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
HMY34_06500 (ispA)
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
HMY34_06500 (ispA)
2.5.1.29 geranylgeranyl diphosphate synthase
HMY34_06500 (ispA)
Prenyltransferases [BR:
tsb01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
HMY34_06500 (ispA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
eIF3m_C_helix
Motif
Other DBs
NCBI-ProteinID:
QQZ28435
LinkDB
All DBs
Position
complement(1326463..1327356)
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AA seq
297 aa
AA seq
DB search
MLNVRNRLQAWQGRIESVLEDVLPPATTHPAVLHQALRYSVLDGGKRMRPLLVYATGEAL
GIAPEHLDIPAAAVELIHVYSLVHDDLPAMDDDDLRRGKPTCHKAFDEPTAILVGDALQA
LAFQVLAAHPRMMASPAQRLRMIELLGQAAGSRGMVGGQALDLAAVGETLTEVELENMHI
HKTGALIRASVLLAAYSVEALDAQRLQQLDHFAKCIGLAFQVQDDILDVESDTQTLGKTR
GADEAAGKPTYPSIIGLSASKMKLQDLYDEALNALVAFGESAHLLREIAEFTVKRIR
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatgtgcgtaatcgtttgcaagcctggcaagggcgtattgaatcggtgttggaa
gatgttttgccaccggcgacgacgcatcctgcggtattacatcaagccttgcgctattcg
gtgctggatggcggcaagcggatgcgcccgctattggtgtatgccaccggggaagccttg
ggaattgcgccagagcatttggatattccagcggctgcggtagaactgattcatgtgtat
tcgctggtgcatgacgatttaccggcaatggacgatgatgatttacgccgaggtaaacca
acctgccataaagcgttcgatgagccgaccgcgattttggtgggggatgcgttgcaagct
ttggcatttcaggtattggcggcacacccccggatgatggcttcgcccgcgcaacgcttg
cggatgattgagttattggggcaggcggcgggttctcgcggcatggtcggtgggcaagcg
cttgatttggcagccgtcggggaaaccctgactgaggtagaattggaaaacatgcacatt
cataaaaccggtgcattgattcgtgccagtgtgttgttggcagcgtatagtgtggaagca
ttggatgcgcagcgtttgcaacaattggatcattttgcaaaatgcatcggtttggcgttc
caagtgcaagacgatattctggatgtggaaagcgatacccagaccttgggtaaaacccgt
ggcgctgacgaggctgcgggtaagccgacctatccttccatcattggcttgtccgcttcc
aaaatgaaactacaggatttgtatgacgaagcgttgaacgctttggtcgcctttggtgaa
tcggcgcatttgttgcgtgaaattgccgagttcacggttaagcgcatacgataa
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