Thiothrix subterranea: HMY34_06565
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Entry
HMY34_06565 CDS
T07831
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tsb
Thiothrix subterranea
Pathway
tsb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMY34_06565 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsb03021
]
HMY34_06565 (rpoA)
03400 DNA repair and recombination proteins [BR:
tsb03400
]
HMY34_06565 (rpoA)
Enzymes [BR:
tsb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMY34_06565 (rpoA)
Transcription machinery [BR:
tsb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMY34_06565 (rpoA)
DNA repair and recombination proteins [BR:
tsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMY34_06565 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
QQZ28447
LinkDB
All DBs
Position
complement(1336323..1337327)
Genome browser
AA seq
334 aa
AA seq
DB search
MTSKTTELLKPRNVHVQETGLNTYRITLEPLERGFGHTLGNALRRILLSSIPGSAVTEVQ
ITGVVHEYTSIEGVQEDVVEILLNLKNLAIRLNARDEATLTLKKKGKGVVTAADIERDHD
VDIINPDHVIAHVTKDDTDLEMSLTITRGRGYQPASVRRGPDSPELPLGTLVLDASYSPI
TRVAYNVDSARVEQRTDMDKLVLEIQTNGSVNAEESIGMAAQILQQQLAVFFDLRIEEPV
RREESQPEIDPILLRPVDDLELTVRSANCLKAENLFYIGDLVQRTETELLKTPNLGKKSL
TEIKDVLAQHGLTLGAKLDSWPPAGLDHRDSKVA
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgaaaacaacagaattgctgaaaccacgcaatgttcatgtgcaagagacaggt
ttaaatacctatcgcattacacttgagccgttagagcgcggttttggtcacacgttgggt
aatgccttgcgccgtattttgctgtcctctattccgggcagtgcagtgacggaagtgcaa
attactggcgtggtacacgaatacaccagtattgaaggtgtgcaagaagatgtggttgag
attctgctgaatctcaagaacttggcgattcgccttaatgcacgtgacgaagcaaccttg
accctgaagaaaaaaggcaaaggcgttgtaacggctgcggatattgagcgcgatcatgac
gtggatatcattaaccctgatcacgttattgcacacgtaaccaaggatgacacggatctg
gaaatgagcttgaccattacccgtggtcgaggctatcaaccagcatcagtacgtcgtggc
ccggactctcctgaattgccattaggtactttggtgttggacgccagctacagtccaatt
acgcgcgttgcctacaatgtagacagcgctcgtgttgagcagcgtactgacatggacaag
ttggtgctggaaatccaaaccaatggttccgttaacgcggaagaatccattggcatggca
gcacagattctgcaacagcaattggctgtcttcttcgatttgcgtattgaagagccggtt
cgccgtgaagaatctcaaccagaaattgacccgattctgttgcgtccggttgacgatctg
gaactgactgtacgttcagctaactgcctcaaagcagaaaatctgttctacatcggtgat
ctcgtacaacgtactgagactgaattgctgaagactccgaatctgggcaaaaagtctttg
actgaaattaaagatgtgctggcacagcatggtctgacactgggcgctaagctggatagc
tggcctccggcaggtcttgatcaccgtgacagcaaagtggcttaa
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