Thiothrix subterranea: HMY34_06715
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Entry
HMY34_06715 CDS
T07831
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tsb
Thiothrix subterranea
Pathway
tsb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMY34_06715 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsb03021
]
HMY34_06715 (rpoC)
03400 DNA repair and recombination proteins [BR:
tsb03400
]
HMY34_06715 (rpoC)
Enzymes [BR:
tsb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMY34_06715 (rpoC)
Transcription machinery [BR:
tsb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMY34_06715 (rpoC)
DNA repair and recombination proteins [BR:
tsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMY34_06715 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
DUF3150
Motif
Other DBs
NCBI-ProteinID:
QQZ28476
LinkDB
All DBs
Position
complement(1352777..1356967)
Genome browser
AA seq
1396 aa
AA seq
DB search
MKDLLNFHKKEQETQDFDAIKVGLASPEIIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTQTKVRRDRMGHIDLASPVAHIWFLKSL
PSRIGLLLDMTLRDIERILYFETFVVTEPGMTTLERSQLLSDEAYLEAIEEFGDEFEASM
GAEAVLELLRSTDLKEEVARMREEIAETGSETKLKRLGKRLKLMESFINSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPA
LRLHQCGLPKKMALELFKPFIFGKLQRRGLATTIKAAKKLVERETAEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMATNNVLSPANGEPIIVPSQDIVLGLYYMTRDAINAKGEGMIFADPLEVQRAYDTG
NVSLHAKVKVRITDSLKDEDGEFIKRTRVLDTTVGRALLTSIMPEGLPFELFNTVLKKKA
ISKLINEAYRRVGLKASVVFADQLMYTGYRYATRAGVSFCADDMMIPEKKAGLLAEAEDA
VLEIQKQFSSGLVTQGERYNKVVDIWASTNEKVAKAMMEKIGKQEVIDAEGNLVYQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDMVVTIDDCGTVQGIKMRPIIEGGDVVEALAERVL
GRVVAQDVTRGDEILIPAGTFLDEAWVKQIDALAVDEIVVRSAITCETRYGVCAKCYGRD
LARGHIVNKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAESSIAVKSSGQVHLLN
VKTVRNKDGKLVVVSRSGELGVVDENGRDKERYKLTYGALLTIDHYDKVVAGQEVATWDP
HTHPIISEVAGQVSFSDFIDNVTVQTKVDEMTGLSSIEVMDPKNRPTAGRELRPTVRLLD
ERGDSVFFEGTKIPVQYPLPAGAIVSSTNGATVQVGEVVARLPQASSKTRDITGGLPRVA
DLFEARKPKDGAILAEKTGTISFGKETKGKQRVIITGEDGEHYEELIPKWRNLDVFEGEK
LNRGEVIADGEPNPHDILRLLGATALAEYQAREIQAVYRLQGVKINDKHIEVIVRQMMRK
VEVIDTGDSKFLRGEQTDYWRVVEENKRLDQEGKLKIVYERLLMGITKASLVTDSFVSAA
SFQETTRVLTEAAVRGARDELRGLKENVIVGRLIPAGTGLAYHDARRSQRNEFAYERPAP
TETISFGEPLDMGSDD
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttattgaacttccacaagaaagagcaggaaacccaagactttgatgcaatc
aaggttggtttggcttcccctgagattatccgttcatggtcgtttggcgaagtcaaaaag
cctgaaaccatcaattaccggacgtttaagccggagcgcgacggtttgttctgcgccaaa
atttttggcccagtcaaagactatgagtgcttgtgcggtaaatacaagcgcttgaagcac
cgtggcgtggtgtgtgaaaaatgtggcgttgaagtcacccagaccaaggtgcgccgtgat
cgcatggggcatatcgacctcgccagcccggtggcgcatatctggtttttgaaatcattg
ccgtcccgcatcggtttgttgttggacatgacgttgcgggatattgaacgcattctgtac
tttgaaaccttcgtggtgacagagccgggcatgacgacgctggaacgctctcagttgctc
agcgatgaagcctacttggaagctattgaagaattcggtgacgaatttgaagccagcatg
ggtgcagaagcggtattggaattgctgcgctctaccgatctcaaggaagaagtcgcgcgg
atgcgtgaagaaatcgcggagacgggttctgaaaccaaactgaaacgtttgggtaagcgc
ttgaaattaatggaatccttcatcaattccggcaataaacctgagtggatgattatgacg
gtgctgcctgtgttgccgccggatttgcgtccattagtgccgttggatggtggtcgtttt
gcgacatccgatttgaacgatctgtaccgccgtgttatcaaccgtaacaaccgtttaaag
cgtttgttagagctgaatgcaccagacattatcgtgcgcaatgaaaagcgtatgttgcaa
gagtctgtggatgcgctgctcgacaacgggcgtcgtggtcgtgcgattaccggttctaac
aagcgtccgctgaaatccttgtcagacatgatcaagggtaagcaaggccgtttccgtcag
aacttgttgggtaaacgggtcgactattctggccgttcggttatcgtggttggccctgcg
ttgcgtttgcaccaatgcggtctgccgaagaaaatggcgctggaactgttcaagccgttc
attttcggtaagttacaacgccgtggtttagcgaccaccatcaaggcggcgaagaaactg
gtcgagcgtgaaacggcggaagtctgggatattctcgcggaagtcatccgtgaacatccg
gtcatgctcaaccgcgcacctaccttgcaccgtttggggattcaggcgttcgagccgacc
ctgatcgaaggtaaagccatccagttgcacccgctggtgtgttcagcgttcaacgccgac
ttcgacggcgaccagatggcggtacacgtaccgttgtcactggaagcgcagttggaagcg
cgtaccctgatgatggcgaccaataacgtcctgtcacctgccaacggcgagccgatcatt
gtgccgtcgcaagacatcgttttgggtctgtattacatgacccgtgatgcgattaatgcg
aaaggcgagggcatgatctttgccgatccgttggaagtgcaacgggcttacgataccggt
aatgtatcgctccacgccaaagtcaaagtgcggattactgatagtcttaaagacgaagac
ggtgaattcatcaagcgtactcgcgtgttggataccacggtcggacgtgctttgctaact
agcattatgccggaaggtttgccgtttgaattgttcaacacggtgttgaagaaaaaggca
atttccaagctgatcaatgaagcttaccgtcgggtgggtttgaaagcatccgtcgtgttt
gctgaccaattgatgtataccggctaccgttacgcgacccgtgccggagtttctttctgt
gcggatgatatgatgatccccgaaaagaaagccggtttgttggcagaagcggaagatgcg
gtactggaaattcagaagcaattctccagcggtttggtgacacagggcgaacgttacaat
aaggttgttgacatctgggcgagtaccaacgaaaaagtcgcgaaggcgatgatggagaaa
attggtaagcaggaagtcattgatgcggaaggcaatctggtttaccaagagtccttcaac
tccatctacatgatggcggattccggggcgcggggttctgcggcgcagattcgtcagttg
gcagggatgcggggtttgatggcaaaaccggacggttccatcattgaaacgccgattacc
tctaacttccgcgaaggcttgaacgttctgcaatactttatctcgacgcacggtgcgcgg
aaaggtttggcggataccgctctcaaaaccgcgaattctggttatctgacgcggcgtttg
gtcgacgtggcgcaagacatggtggtcacgattgacgattgcggcacggtgcagggcatc
aaaatgcgtccgatcatcgaaggcggtgacgtggtagaagccttggcggagcgtgtattg
gggcgtgtggtggcgcaggatgttacccgtggtgatgaaattctgattcccgccggtact
ttccttgacgaagcatgggtcaagcaaattgatgcgctggcagtggatgaaatcgtggta
cgttcagcgattacctgcgaaacccgttacggtgtgtgcgcgaaatgctacggtcgtgac
cttgctcgtgggcatattgtcaacaagggtgaggctgtcggggtcattgcggcgcaatct
atcggtgagccgggtactcagttgaccatgcgtaccttccacatcgggggtgcggcaagc
cggtcggcggcagaaagcagcattgcggtcaagtccagcggtcaggtgcatttgctcaac
gtgaaaacggtgcgcaacaaagatggcaaattggtggtagtgtcgcgttccggcgaactg
ggtgtggtcgatgaaaatgggcgcgataaagagcgttataaattgacctacggtgcgctg
ttaacgattgaccattacgacaaagtggtcgccggtcaggaagtagcaacgtgggatccg
catacccacccgattatttccgaggtagcgggtcaagtcagtttcagtgactttattgat
aacgtcacggtgcagactaaagtagacgaaatgacaggtttgtcctccatcgaagtcatg
gatcctaaaaaccgtcctaccgccggtcgcgaattgcgtccaaccgtgcgtttgttggat
gagcgtggcgatagtgtattctttgaaggcacgaagattccggtgcaataccccttgcca
gcgggcgcaatcgttagctctaccaatggcgcaaccgtgcaggtcggcgaagttgtggcg
cgtctgccgcaagcatcctctaagacacgtgacatcacgggtggtttgccacgggttgct
gacttgtttgaagcgcgtaagccgaaagacggtgcgattctggcggaaaaaaccgggaca
atctccttcggtaaagagaccaaaggtaagcagcgtgtcattatcaccggtgaagacggt
gagcattacgaagagctgattcctaaatggcgtaatctggacgtgtttgagggtgagaaa
cttaaccgtggtgaggtaattgccgacggtgagcccaatccgcatgacatcctgcgcttg
ttgggtgcgactgcgctggcagaataccaggcgagggaaatccaagccgtttaccgctta
caaggggtaaagatcaacgacaaacacatcgaagtcattgtgcgtcagatgatgcgcaag
gtcgaagtgattgataccggtgatagtaagttcttgcgtggtgagcaaaccgactattgg
cgtgtggtggaagaaaacaaacgtcttgatcaagaaggtaagctcaaaatcgtttacgag
cggctgcttatgggtatcaccaaagcatccttggtgacggactcctttgtgtctgcggcg
tccttccaagagactacacgggttctgaccgaagctgcggtacgcggtgcacgtgatgag
ttgcgtggcttgaaagaaaacgtcattgtggggcgcttgattccggcaggtacgggcttg
gcttaccatgacgcacgtcgtagccaacgcaatgagtttgcttacgaacgtccggcgccg
actgaaacgatcagtttcggtgagcctttggacatgggttcagacgattaa
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