Thiothrix subterranea: HMY34_07930
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Entry
HMY34_07930 CDS
T07831
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K14414
transcriptional regulatory protein RtcR
Organism
tsb
Thiothrix subterranea
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsb03000
]
HMY34_07930
Transcription factors [BR:
tsb03000
]
Prokaryotic type
Other transcription factors
Others
HMY34_07930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA
AAA_5
AAA_16
Mg_chelatase
MCM
AAA_22
NACHT
AAA_19
DUF815
NTPase_1
AAA_2
AAA_14
AAA_30
AAA_18
AAA_29
ABC_tran
KAP_NTPase
AAA_7
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
QQZ30908
LinkDB
All DBs
Position
1612376..1613968
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AA seq
530 aa
AA seq
DB search
MNTTVIGILGSRLDHQGLGKRRHSRWRPSVGILMHPDFPVNEFVLIHHADEAELAGITLR
DMRELAPDTRFTSHVVNYANPWDFGEVYSQLHDFTRHYRFDPEQNHYYVHITTGTHVAQI
CLFLLTEANYIPGKLLQTSPSKESTQGTLQIIDLDLSRYDQIASRFEREAQEGMAYLKGG
IDTRNPAFNALIAQLEQVSIRSAAPILLTGATGVGKSRLAKRIYELKKQRGQVSGKLVEV
NCATLRGDNAMSALFGHVKGAFTGALTARSGLLREADKGLLFLDEIGELGLDEQAMLLRA
IEDKVFTPFGSDKETSSDFQLIAGTNRDLFQRVRDGKFREDLLARINLWTYELPGLRHRL
EDLEANLEYELQQFTRKVGHKVSFNKAAREQYLAFAQTPAATWRANFRDLNSSITRMATL
ANGGRITEESVTEEIRRLRYDWGSFQEAAAINNTDSVLREFVAAEVLETIDHFDRVQLAE
VIRVCRTAKSLADAGRSLFNVSRTQRASANDSHRLRVYLQKYGLTFQQLT
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaataccaccgtcatcggcatcctcggctcgcgccttgaccaccaaggcttaggcaaa
cgccgccactcgcgctggcggccttccgtcggcatcctcatgcaccccgattttccggtg
aatgaattcgtgctaatccaccacgcagacgaggccgaactggcaggcatcaccctacgc
gacatgcgcgaacttgcccccgatacgcgcttcaccagccacgtcgtcaactacgccaac
ccgtgggatttcggcgaagtttacagccagctccacgatttcacccgccactaccgtttc
gacccggaacaaaaccactactacgtccacatcaccacgggtacgcacgtcgcacaaatc
tgcctgttcttgctgacggaagccaattacatccccggcaaactcttgcaaacctcgccc
agcaaggaaagcacgcaaggcacactgcaaatcatcgacctcgatctgtcgcgctacgac
cagattgccagccgcttcgagcgcgaagcacaggaaggcatggcatacctgaaaggcggc
atcgacacccgcaaccccgctttcaacgccctgattgcgcaactcgaacaagtctccatc
cgctccgccgcgcccatcctactcacgggtgctacaggtgtcggaaaatcacgcctcgcc
aaacgcatttacgaactgaaaaagcagcgtgggcaagtcagcggcaaactggtggaagtc
aactgcgctaccttgcgcggcgacaatgccatgtccgcgctgtttgggcatgtgaaaggc
gcgttcaccggcgcactcaccgcccgcagcggcttgttgcgtgaagccgataagggtttg
ttgtttctggatgaaatcggcgaactagggctggacgaacaagcgatgctactccgcgcc
atcgaagacaaagtatttaccccgttcggcagcgacaaggaaaccagcagcgatttccaa
ctgattgccggaaccaaccgcgacctgttccagcgcgtgcgtgacggcaaattccgcgaa
gacttgctggcacgcatcaatttgtggacatacgaactccccggtttgcgccaccgcctc
gaagatttggaggcgaatctcgaatacgaattgcagcaattcacccgcaaagtcgggcac
aaagtcagcttcaacaaagcggcgcgggaacaatacctcgcgtttgcgcaaaccccagcg
gcaacctggcgggcgaatttccgcgacctcaattccagcattacgcgcatggcaacgctg
gcgaatggcggacgcattaccgaagaaagcgtgacggaggaaatccgccgcttgcgctac
gattggggcagttttcaggaggcggcagccatcaacaataccgatagcgtattgcgcgaa
ttcgtggcggctgaggtgctggaaaccatcgaccatttcgaccgggtgcaattggctgaa
gtcatccgcgtgtgccgcaccgccaaaagtcttgcagatgcggggcgcagcttgttcaac
gtcagccgcacccaacgcgccagcgcgaacgattcgcaccgcctgcgggtgtatttgcag
aaatacgggctaaccttccagcaactcacctaa
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