Thiothrix subterranea: HMY34_10140
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Entry
HMY34_10140 CDS
T07831
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tsb
Thiothrix subterranea
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsb03016
]
HMY34_10140
Enzymes [BR:
tsb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HMY34_10140
Transfer RNA biogenesis [BR:
tsb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HMY34_10140
Prokaryotic type
tRNA splicing ligases
HMY34_10140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QQZ29091
LinkDB
All DBs
Position
2063458..2064660
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AA seq
400 aa
AA seq
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MPISFMLNKGKVPVKIFTDDVDSGSLTQLGNLSQLPFIHSHIAAMPDVHHGIGATVGSVI
PTRGAIIPAAVGVDIGCGMNAVRLSLKAHDLPDNLYNIRTAIEQRVPTGFDEHERPSLNG
ATLNNMGKHLDVITDKHPGLVKMLKNFHRQWGKQLGTLGGGNHFIELCIDESDDVWVMLH
SGSRGVGNAIGRYFIEKAKKDVGRELGQLPDKDLAYFTEGTQHFDDYVEAVGWAQDYAMV
NRREMMRLVLDALQRSKALPAFTTTREAINCHHNYVQKETHFGAEVYLTRKGAISAQLGQ
LGIIPGSMGAKSYIVRGLGNAQSFCSCSHGAGRRMSRTEAKRRFNTLDLEAQTKGIECRK
DKGVVDEIPGAYKDIDVVMQNQSDLVEVVHTLKQVICVKG
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcagttttatgctcaataagggcaaggttccggtcaagatttttactgacgac
gtggatagcggttcgctgacacaattgggaaacctatcgcaactgcccttcatccacagc
cacattgcggcgatgccagacgtgcatcatggcattggtgcgaccgtgggttcggtgatt
cccacccgtggcgcgattattcccgctgccgtcggcgtggatattggttgtggaatgaac
gcggtacgtttatcgctcaaagcccacgacttgccggataacttgtacaacattcgcacg
gcgattgaacagcgcgtgcctaccggtttcgatgaacacgagcgccccagcctcaacggt
gcgacgctcaataatatgggtaagcatctggatgtgattaccgacaagcaccccggactg
gtgaaaatgttgaaaaactttcaccgccaatggggcaagcaactcggcacactcggtggc
ggcaaccattttatcgaactgtgcatcgacgaaagtgacgacgtgtgggtgatgctgcat
tccggcagtcgcggggttggcaatgccatcgggcgttatttcatcgaaaaagccaaaaag
gatgtggggcgggaactcggtcaattgccggacaaagacctcgcctacttcaccgaaggc
acacagcatttcgatgattacgtggaagccgtcggttgggcgcaggattacgccatggtc
aatcgccgcgaaatgatgcgcttggtattagatgcgttgcaacgcagcaaagccttgccc
gcgtttaccaccactcgtgaagcgatcaactgccaccacaattacgtgcaaaaggaaacg
cacttcggcgcggaagtttacctgactcgcaagggcgcaatcagtgcgcagttggggcag
ctcggcattattcccggcagcatgggggcgaaatcgtacatcgtgcgcggcttaggcaat
gcgcaatcgttctgttcctgttcgcacggcgcagggcgacgcatgagccgcaccgaagcc
aaacggcgtttcaacaccctcgatctggaagcccagaccaagggcatcgaatgccgcaag
gataaaggcgtggttgatgaaattcccggcgcgtacaaggacatcgacgtggtgatgcag
aaccaaagcgatctggtcgaggtcgtacatacgttgaaacaagtcatttgcgtgaaaggt
tag
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