Thiothrix subterranea: HMY34_10195
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Entry
HMY34_10195 CDS
T07831
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tsb
Thiothrix subterranea
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsb03016
]
HMY34_10195 (rnd)
Enzymes [BR:
tsb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HMY34_10195 (rnd)
Transfer RNA biogenesis [BR:
tsb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HMY34_10195 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QQZ29102
LinkDB
All DBs
Position
complement(2077391..2078533)
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AA seq
380 aa
AA seq
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MFDYIDNAEKLTDLMARLDAAEWITLDTEFIREKTYYPRLCLIQIASADTLACIDPIAIS
DLQPFLKWLNQPQRLKVLHAAWQDLEIFHHLGNGNVPAPLFDTQVAAAVLGMGDQLGYAR
LVEALLGIALDKSQSRTDWSRRPLTRAQLEYAIDDVRHLRDVYLRLREQLEQLGRMHWLE
KPFQKLADPATYTVDPQTVWERVKGLQILKPQQLAILRELAAWREQRALLKDIPRRWILS
DEILLDMARMQPDSPAALRQIRGLSDEQIERGAGEWLACIARGQAVPKSECPSLPRRRKL
DASMSVVADVLTALLNQVAHENGISAQMIATRQQLEKMLEEGRTTLSDDWRGALVNDLFT
AVLAGKASIRVRDQQLVMEA
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgtttgattatattgataatgccgaaaagttaaccgacctcatggctcggctcgatgct
gccgaatggattaccttggatacggaattcatccgcgaaaaaacctattacccgcgattg
tgtttgatccaaattgccagtgctgacaccttggcgtgcattgaccccatcgcgattagt
gatttgcaaccgtttctgaagtggctcaatcagccacagcgcctgaaagtcttgcacgcc
gcttggcaagatctggaaatcttccaccatttaggcaatggcaacgtacccgccccgctg
tttgatacccaagttgccgctgccgtgttgggcatgggcgaccaattggggtatgcgcgt
ttggtggaagccttgctgggcatagcgctggataaatcgcagtcacgtaccgattggtca
cgccgccctttgacgagggcgcaactggaatacgccattgacgatgtacgccatttgcgc
gatgtttatttgcgcttgcgcgaacaactggaacaattggggcggatgcattggttggaa
aaaccgttccaaaaactcgccgatcccgcgacttacaccgttgacccgcaaaccgtgtgg
gaacgggtgaaaggcttgcaaatcctcaagccgcagcaattggcaattttgcgcgaatta
gcggcatggcgtgaacagcgtgccttgctcaaagacattccccgacgctggattttatcc
gatgaaatcttgctagacatggcacggatgcaaccggacagcccagcggcattgcgccag
attcgtggcttgagcgatgaacaaattgaacgcggtgcgggcgaatggctggcttgcatt
gctcgtggacaagcagtgccgaaaagtgaatgcccatccttaccgcgtcgccgcaaactg
gatgcgtccatgagcgtggtggcggacgtgctgaccgccctgctcaatcaagtcgcgcat
gaaaacggcatttcggcgcaaatgattgccacccgccaacagcttgaaaaaatgctggaa
gaagggcgcaccaccctgtctgacgattggcgtggcgcgttggtgaatgatttgtttacg
gcggtattggcaggtaaggccagcattcgcgtgcgggatcagcaattggtcatggaagcg
tga
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