Thiothrix subterranea: HMY34_13045
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Entry
HMY34_13045 CDS
T07831
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
tsb
Thiothrix subterranea
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsb03019
]
HMY34_13045 (hrpB)
Enzymes [BR:
tsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HMY34_13045 (hrpB)
Messenger RNA biogenesis [BR:
tsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HMY34_13045 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
ResIII
Flavi_DEAD
HA2_C
AAA_19
AAA_11
nSTAND3
AAA_30
HA2_N
Motif
Other DBs
NCBI-ProteinID:
QQZ29622
LinkDB
All DBs
Position
complement(2636310..2638883)
Genome browser
AA seq
857 aa
AA seq
DB search
MKTLCNEPPLPIDAVLNDLKQALREHHEVVLEAPPGAGKTTRVPLALLDEPWLLGKKILM
LEPRRIAAKNAAHRMASLLNESAGQTVGYRMRLDHKISRQTRIEVITEGILTRMLQQDPS
LDGVGLVIFDEFHERNLDSDLALSLCLKGRELFRDDSNPLKLLVMSATLDSVAIASLLDD
APVVRSEGRTYPVNIRYGQAAKPGERIVERMVATLRQALSDNPDSSILAFLPGQGEIHRT
TEALGEWLVERRIRGVHLRPMYGNLTLDEQQQAIAPLTAAHAGERKVVLATNIAETSLTI
EGVDVVVDSGLVREARFDPGTGMTGLHTTRISRASSTQRAGRAGRLAPGQCYRLWTESQQ
EQLAAHNTPEILRADLAPLALQLLQWGVDDPTELRWLDVPPYGLWQQALDLLETLGAIQR
KGKATVLTAHGQVMCLLPVHPRLAHLLICGAQAGHLNAAANLASLLSERNPFSQDNPDIS
QPLEILAGTSRCPSPQQGWLQRTRQLANQFVEQIRSQKLLESGVSFLLPATQIHGYLLAC
AYPDRIARRRHSGGYQLANGRSADLPDKHALGNQAWLAIAEVSSMVGKSSDTIRSAAALD
DKLFTSALADQVRPQTVVEWDNKAGRFIAEQQQKIGALVLQRKALQAVPGEAKSTALIGF
IRKQGLDVLPWQAEQEQWCARINLLRGVEPERAWPDVSRANLLATLEDWLAPYLNAVNVL
GDFKKLDLTTILSSLLPWDMQQRLEQLAPKRLDVPSGHDIAIDYSQSPPVLAVKLQEMFG
CQQTPTIANGRVALLVHLLSPAGRPLQITQDLAGFWRTSYHEVKKDMKGRYPKHPWPDDP
LQAVATRKVKRLLKDSC
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgctatgtaacgaaccgcccctccccattgatgccgtcctcaacgacctcaaa
caagccctgcgtgaacaccatgaagtcgtgctggaagccccgccgggcgcgggcaaaacc
acccgcgttcccttggccttgctggatgagccgtggcttttgggcaaaaaaatcctcatg
ctcgaaccgcgccgcattgccgccaaaaatgccgcgcaccgcatggcaagtttgctgaac
gaaagcgcagggcaaaccgtcggctaccggatgcgccttgaccataaaatcagccgccag
acccgcatcgaagtcattaccgaaggcatcctcacccgcatgttgcagcaagacccgtcg
ctggatggcgttggcttggtcattttcgacgaattccacgaacgcaatctcgattccgac
ctcgccctcagcttgtgtttgaaagggcgcgaactgttccgcgacgacagcaatccgctg
aaactgcttgtcatgtccgccaccttggatagcgttgcgattgccagcctgctggatgat
gcgcccgtggtacgcagtgaaggccgcacttacccagtaaacatacgctatgggcaagcc
gccaaacctggcgaacgcatcgtcgagcgtatggttgccaccttgcgccaagccttgagc
gacaaccccgacagcagcatcctcgctttcctacccggtcaaggcgaaattcaccgtacc
actgaagcactcggcgaatggctggtggaacgccgcatccgtggcgtgcatttgcgcccc
atgtacggcaacctaacgctggacgaacagcaacaagccattgccccgttaaccgctgcc
cacgcaggcgaacgcaaagtcgtattggcaaccaatattgccgaaaccagcctgaccatt
gaaggcgtggatgtagtggtcgattccggtctggtgcgtgaagcccgttttgaccccggc
acgggcatgactggcttgcataccacgcgcatttcccgtgcttccagcacccaacgcgcc
ggacgtgcaggccgacttgcccccggtcagtgctaccgcctgtggacagaaagccagcaa
gaacaacttgccgcccacaatacccccgaaatcctgcgtgctgatctcgccccactcgcc
ctgcaattactgcaatggggtgtggatgatccgacggaattgcgttggctggatgtgccg
ccctacggcttatggcaacaagcgttggacttgttggaaacgctcggcgcgattcaacgc
aagggcaaagccacggtgctgactgcacacgggcaagtgatgtgtctgctgcccgtgcat
ccgcgtctcgcccacctgctgatttgcggcgcacaagccggacacctgaacgccgccgcc
aaccttgccagcctgctgtctgagcgtaacccgttcagccaggacaatcccgacattagc
cagccgctggaaatactggcaggcacaagccgttgcccgtccccgcaacagggctggtta
cagcgtacccgccaactggcaaaccagtttgtggagcaaatccgcagccagaaattgctg
gaaagtggcgtgagttttttgctgcccgcgacacagattcacggttatttactggcttgt
gcctacccggatcggattgcccgaaggcggcattccggcggctaccagcttgccaacgga
cgcagtgccgacctgcccgacaaacacgcgctcggcaatcaggcatggctggcgattgca
gaagtcagcagcatggtgggcaaaagcagcgacaccatccgctccgctgccgcgctggat
gacaagctgtttacgagtgcattggcggatcaagtacgcccgcaaaccgtggtggaatgg
gacaataaagcggggcgtttcatcgccgaacaacagcaaaaaatcggcgcattggtgtta
cagcgcaaagccctgcaagccgtgccgggtgaagccaaaagcaccgcactgatcggtttc
atccgcaagcaagggctggatgtattgccgtggcaggcggaacaggaacaatggtgcgca
agaatcaatcttttgcgtggtgtcgaaccggaacgagcatggcctgatgtcagccgcgct
aacttgcttgcaacactggaagattggcttgccccgtatctgaatgcagttaatgtgctg
ggtgatttcaaaaagctagatttgactaccatcctcagcagtctattgccgtgggacatg
caacaacgcctcgaacaacttgcccccaaacgtttggatgtgccttccggtcatgacatc
gccatcgactacagccaatcgccgccggtactcgcggtgaaattgcaggaaatgtttggt
tgccaacaaaccccgaccattgccaatggcagggtggcgttgctggtgcatctgctgtct
ccggcgggtaggccgttgcagattacgcaggacttggcggggttttggcgtacttcctac
catgaggtgaaaaaggatatgaaggggcggtatcccaagcatccgtggccggatgatccg
ttgcaggcagtggcgacgcgcaaggttaagcggctgctgaaggattcatgctag
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