Thiothrix subterranea: HMY34_13055
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Entry
HMY34_13055 CDS
T07831
Symbol
nifA
Name
(GenBank) nif-specific transcriptional activator NifA
KO
K02584
Nif-specific regulatory protein
Organism
tsb
Thiothrix subterranea
Pathway
tsb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HMY34_13055 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsb03000
]
HMY34_13055 (nifA)
Transcription factors [BR:
tsb03000
]
Prokaryotic type
Helix-turn-helix
Other families
HMY34_13055 (nifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF_2
GAF
HTH_8
AAA_5
AAA
AAA_2
Mg_chelatase
AAA_16
GAF_3
AAA_3
nSTAND3
HTH_23
Parvo_NS1
bpMoxR
Motif
Other DBs
NCBI-ProteinID:
QQZ29624
LinkDB
All DBs
Position
complement(2639786..2641384)
Genome browser
AA seq
532 aa
AA seq
DB search
MSHDNAQLQQTLNLLEDELACIYAVSKVLSRSLNLKETLREVLRVLHEEGQLEHGMVSLL
DGDSGDLLLLELHRADKLTVENVRYRAGEGIMGLAIEMDKPLIIRKLADEPRFLDKLGVY
NPVLPLIAVPIRARGDEIVGVLAAQPPAELHLLGERRRFLEMIGNLIGQNVVLANEVASD
KQELQKERDSLRRKVKGESGFANLIGRTRVMQVVFDQARQVAKWNTTVLIRGESGTGKEL
IANAIHYHSPRANNAFIKLNCAALPDNLLESELFGHEKGAFTGAVSQRKGRFEQADGGTL
FLDEIGEITPAFQAKLLRVLQEGEFERVGGSKTLNVDVRVIAATNRNLEQEVRAGEFRED
LYYRLNVMPIIMPPLRERLEDIPDLARFLVNKISNKQARPLDIGDSAIRALMHHGWPGNV
RELENCMERAAILSTDGHIDQQVIRLTGLENQFPADDSGGGRDAKFCVSTGSAGNGKPKA
DLNDPDLDERERVIAALEEAGWVQAKAARLLNMTPRQIAYRIQILNIQVRQI
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgagccacgacaacgcgcaattgcaacaaaccctcaacttgctggaagacgaacttgcc
tgtatttacgccgtcagcaaagtgttaagccgctccctcaacctcaaagaaaccttgcgc
gaagtgttgcgcgtactgcacgaagaaggccagctcgaacacggcatggtcagcctactc
gacggcgatagcggcgatttattgctgctggaattgcaccgtgccgacaaacttaccgtg
gaaaacgtgcgctaccgtgcgggcgaaggcatcatggggctggcgattgaaatggataag
ccactcattatccgtaagttagccgacgaaccgcgttttctcgacaaactcggtgtatac
aacccggtattgccgctgattgctgtgccgatccgcgcccgtggtgatgaaatcgtcggc
gtattagccgcacaaccgccagccgaactgcacttgctgggcgaacgtcgccgtttcctc
gaaatgattggcaacctgatcgggcaaaacgtcgtccttgccaacgaagtcgccagcgac
aagcaggaactgcaaaaagaacgcgattcgctacgccgcaaggttaagggcgaatccggt
ttcgccaacctgatcggacgtacccgcgtgatgcaagtcgtattcgaccaagcacggcaa
gtcgccaagtggaacacgaccgtactcattcgcggcgaatccggtacgggtaaagagctg
atcgccaacgccatccattaccattcaccccgcgccaacaacgctttcatcaaactcaac
tgcgccgccttgccggacaatttgctggaatcggaactgttcgggcacgaaaaaggggca
tttaccggcgcagtcagtcagcgcaaagggcgtttcgagcaagcggatggcggcacgttg
tttctggatgaaatcggcgaaatcacccctgcattccaggccaaattgctgcgggtattg
caggaaggcgaattcgagcgcgtcggcggcagcaaaaccctgaacgtggatgtgcgcgtc
atcgccgccaccaaccgcaatctggaacaggaagtgcgggcgggcgagttccgcgaagac
ctgtattaccgcctcaacgtgatgccgatcattatgccgccgttacgcgaacggctggaa
gacatccccgaccttgcccgctttctggtcaataaaatcagcaacaagcaagcgcgaccg
ctggatattggcgacagtgccatccgtgcgctcatgcaccacggctggccgggcaatgtg
cgcgagttggaaaactgcatggaacgtgccgcgattctcagcaccgacgggcatattgac
cagcaagtgatccgcctgacggggctggaaaaccagtttccagcagatgatagcggtggt
ggtagagacgcaaaattttgcgtctctacgggaagcgcaggtaacggcaaaccgaaggcg
gacttgaatgacccggatctggacgaacgtgagcgcgtgattgcggctctggaagaagcg
ggttgggtgcaagccaaggcagcgcggttgctgaatatgaccccacgccaaatcgcctac
cggattcagatactgaatattcaggtgcggcaaatctga
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