Thiothrix subterranea: HMY34_13515
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Entry
HMY34_13515 CDS
T07831
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tsb
Thiothrix subterranea
Pathway
tsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMY34_13515 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsb03021
]
HMY34_13515 (rho)
03019 Messenger RNA biogenesis [BR:
tsb03019
]
HMY34_13515 (rho)
Transcription machinery [BR:
tsb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HMY34_13515 (rho)
Messenger RNA biogenesis [BR:
tsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HMY34_13515 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_25
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
QQZ29709
LinkDB
All DBs
Position
2721015..2722274
Genome browser
AA seq
419 aa
AA seq
DB search
MNLSELKKKSAAEVFEMAQAMGIESISRTRKQDIIFALLKANAANNVDIHGDGVLEILQD
GFGFLRSDDSSYLAGADDIYVSPSQIRRFGLRTGDTVSGKIRPPKDSERYFALLKVDTIN
FEPPESARNKIAFENLTPLHADDRMRMERGNGSREDITARVIDIVAPFGKGQRGLIIAPP
KAGKTIMLQNIAQSIASNYPESYLIVLLIDERPEEVTEMSRMVQGEVVSSTFDEPAARHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEIHLDRRISEKRVFPAINI
NRSGTRREELLTTQDELQTLWVLRKFLHSMDDLDAMELLFDKLSKTKTNSEFFDVMRRG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgtctgaactcaaaaagaaatccgccgccgaagtctttgaaatggctcaagcc
atggggatcgagagcatttcccgcacccgcaaacaagacatcatctttgccttgctgaaa
gccaatgcagccaacaacgtcgacatccacggggatggtgtgctggaaatcctgcaagac
ggctttggtttcctgcgttccgatgattccagctacctcgctggggcggatgatatttac
gtttcaccaagccagattcgccgctttgggctgcgcaccggcgataccgtatcgggtaag
attcgcccaccgaaggacagtgaacgttactttgcactgctgaaagtcgacaccattaac
ttcgagccgcccgaaagtgcgcgtaacaaaattgcctttgaaaacctgactccgctgcac
gccgatgaccggatgcgcatggaacggggtaacggcagccgtgaagacattaccgctcgc
gttatcgacatcgtagcgccgtttggtaaaggtcagcgtggcttgattatcgcgccgcca
aaggccggtaaaaccatcatgctgcaaaacattgcacaaagcattgcctccaattacccc
gaaagttacttgatcgtattgctgatcgacgaacgcccggaagaggtgacagaaatgtcg
cgcatggtgcagggcgaagtcgtgtcgtcgacctttgatgaaccggcagcgcgtcacgtt
caagtcgcggaaatggtcattgaaaaagccaagcgtttggtcgaacacaagcgcgatgtg
gtgattttactcgactcgattacccgtctggcgcgggcttacaacaccgtggtgccatcg
tctggcaaagtattgacggggggtgtggatgccaatgccttgcatcgccccaaacgtttc
ttcggtgcggcacgtaatatcgaagagggtggtagcttaacgattattgccaccgcgttg
attgataccggctcgaaaatggacgaggttatctacgaagaattcaaggggacgggcaat
atggaaatccatctggatcgccgtatttctgagaagcgcgtattcccggcgattaacatc
aaccgttccggcacacgtcgcgaagagttgctgaccacgcaagacgaactgcaaaccttg
tgggtgttgcgtaaattcctgcacagcatggacgatctggatgccatggaattgctgttt
gataagctgtcgaagaccaaaacgaatagcgaattctttgacgtgatgcgtcgcgggtaa
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