Thiothrix subterranea: HMY34_14565
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Entry
HMY34_14565 CDS
T07831
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tsb
Thiothrix subterranea
Pathway
tsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMY34_14565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsb03019
]
HMY34_14565
03009 Ribosome biogenesis [BR:
tsb03009
]
HMY34_14565
Enzymes [BR:
tsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMY34_14565
Messenger RNA biogenesis [BR:
tsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMY34_14565
Ribosome biogenesis [BR:
tsb03009
]
Prokaryotic type
rRNA helicases
HMY34_14565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QQZ29883
LinkDB
All DBs
Position
complement(2939544..2941589)
Genome browser
AA seq
681 aa
AA seq
DB search
MSPETNTPPTFAEFGLAAPVLQAVLDLGYETPSAIQAETIPYLLAGRDVLGQAQTGTGKT
AAFALPLLSRLDMSKTGPQILVLAPTRELAIQVAEAFQKYAGKLPGFHVMPIYGGQDYRT
QFRQLERGVQVVVGTPGRVMDHLRRGSLKLDGLQALVLDEADEMLRMGFVDDIEWIMEQT
PPQRQIALFSATMPPAIHRIAQSYLTDPAEVKIKVKTTTADTIRQRYWLVSGLHKLDALT
RILEAEPFDAVILFVRTKNETVELADKLQARGYNAVALNGDIAQNVRERTIDQLKKGKID
ILVATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRERHLL
RNIERATRKPIDLMELPSTDVINNMRIAQFSQRITDTLAEEGLDFFSQLLEGYEREHNVP
ALEIAAALAKMLQGDSPLLLEERKNHPAFNPNAAREREQEQRPGKRKSNAANSAFSSDDD
TIPMERFRIAVGRSHGVKPGNIVGAIANEAGLDSRYIGYIEIQDDCSLVDLPAGMPKDIL
HELRTARVAGQMLNIEPAGEAAADYSPNKPSGGGQRRDRGGDDRRPPQRRDGPPPRRDGG
AGRGGDRPDRRPRTEKERAPFAGGDKPRFADEKPKFSADKPRFADDKPKFGGDKPPARKP
AVKKAAPDKDKGKPKRPPPAA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtccccagaaacaaacacacctcccacgttcgccgaattcggccttgccgcccccgtg
ctgcaagccgtcctagacctcggctatgaaaccccgtcagccattcaagctgaaaccatc
ccttacctgctggcaggtcgcgatgtcctcggacaagcgcaaaccggcacaggtaaaact
gctgcattcgccctacccctgctctcacgattggacatgagcaagaccgggccacaaatt
ctcgtcctcgcgccgacccgcgaactggcgattcaagttgccgaagcgtttcagaaatac
gcgggcaaactccccggcttccacgtcatgccgatttacggcgggcaagattaccgcacg
caattccgccaactggaacgcggcgtacaagtcgtggtcggcacaccgggtcgcgtcatg
gatcacctgcgccgtggttcactcaaactcgacggcttgcaagcactggtgctggatgaa
gctgacgaaatgttgcgcatgggcttcgtcgatgacatcgaatggatcatggagcaaacc
ccgccacaacgccaaatcgcgctgttctccgcgaccatgccccccgcaattcaccgcatt
gcgcaaagctatttgaccgaccctgccgaagtcaaaatcaaggtcaaaaccaccaccgcc
gacaccatccgtcagcgttactggttggtcagcggcttgcacaagctcgacgcactgacc
cgcatcctcgaagcggaaccgtttgatgccgttattctgttcgtgcgcaccaaaaatgaa
accgtggaactggcggacaaactgcaagcacgcggttacaacgcggttgccctcaacggt
gacattgcgcaaaacgtgcgcgaacgcaccatcgaccagttgaagaaaggcaaaatcgac
atcctcgtcgctaccgacgtcgccgcacgcggcttggatgtggaacgcatcagccacgtc
atcaactacgacattcccaccgacaccgaatcctacgtccaccgcatcgggcgtaccggg
cgtgccgggcgtagcggcgaagcgattttgttcgtatcaccgcgtgaacgtcacttgctg
cgtaacatcgaacgcgccacccgcaaaccgattgatctgatggaattgccttccactgat
gtcatcaacaatatgcggatcgcacaattcagccaacgcatcaccgacacgctggcagaa
gaaggcttggatttcttctcgcaattgctggaaggttacgagcgcgaacacaatgttccc
gcactcgaaattgcggcggcacttgccaaaatgctgcaaggcgattcgcccttgttgctg
gaagagcgcaaaaatcacccggctttcaacccaaatgcggcgcgtgaacgtgagcaagaa
caacgccccggtaagcgcaaatccaacgctgccaactccgcgttcagcagcgacgacgac
accattccaatggaacgtttccgcattgcggttgggcgttcgcacggcgtcaaaccgggc
aatatcgtcggtgcgattgcgaatgaagcaggcttagacagccgctacatcggttatatc
gaaattcaagacgattgcagcttggtcgatttgccagcaggaatgccgaaagacattttg
cacgaattgcgtactgcacgggttgctgggcaaatgttgaatatcgaaccagcgggtgaa
gcagcagcggattattcccccaacaaacccagtggtggcggtcaacgccgtgaccgtggt
ggcgatgatcgtcgcccgccacaacgtcgcgatggcccaccgccgcgccgtgacggtggt
gcaggtcgtggcggtgatcgccccgatcgtcgcccgcgcactgaaaaggaacgcgccccg
tttgcaggcggtgacaagccgcgctttgccgacgaaaaacccaagttcagtgcggacaag
ccgcgctttgctgacgacaagcccaagttcggtggtgacaaacccccagcacgcaagcct
gccgtcaaaaaagccgcgccagacaaggacaaaggtaaacccaagcgtccaccgcctgcc
gcttaa
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