Thiothrix subterranea: HMY34_17450
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Entry
HMY34_17450 CDS
T07831
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
tsb
Thiothrix subterranea
Pathway
tsb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HMY34_17450 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsb03400
]
HMY34_17450 (recB)
Enzymes [BR:
tsb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HMY34_17450 (recB)
DNA repair and recombination proteins [BR:
tsb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HMY34_17450 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQZ30399
LinkDB
All DBs
Position
3541259..3544861
Genome browser
AA seq
1200 aa
AA seq
DB search
MQTLHAQSVPLVGTNLIEASAGTGKTWTISWLYLRLIAVYGLKVDKILVVTYTEAATAEL
RARIRKRLADALAYLEQRPHAETYESLPLEAPLHDCIQRLQLALVSFDEAAVFTIHGFCK
RVLSENAFEARMPFETELVTNEDNLLTELTDKFWYQHFLKPDALHLRLLQKRGLTPDGLL
ANVRNFIGKPYLHTDIQPVTTEAFAQRQSIFESALQACQQHWASEREAIIGLLLGGALNG
STYSKRYVPNWASKLDAYFTNPLELPYETFERFATTALTEKTKSGKATPQHAFFTQVDAL
LAAHDALSEGEQAALEYLRLQLLHHLRAELPVRKQQLGILTFDDLLLHLREALEQHPDFP
PRLALKYQAALIDEFQDTDPIQYEIFERIYRDKPEQPVFYVGDPKQAIYGFRGADIYTYL
KAAHSTSAHYTLQHNFRSHPDLLQALNHLFAQSDQPFRSDIRYEAVSAGKPQHDIFLPSP
LEGEGLGVRGISPLRFWDWNTLDEGYNSPAVQERIAEAVANDIARLLNAGREGIARIGER
PVESRDIAVLVRENQQGEQIKRALLARGIASVQKSRDSIFCTREASDFRAVLRAIAEPGN
ETALKQALVTELFGFTAEDLFALDETPALLEAELEAFHRWHKTWHSQGFMPMFRQWMLQR
QRYAHLLALADGERRLTNLLHLAELIHTESRLQGHGMHALIRWLQQKAEAGEQDEAHELR
LESDENLVQITTIHKSKGLEYGIVYCPYLWAERDAKTSTWFSWYDRDTEAGISRLQAEAF
ASDAALKCFREAEQAESLRLLYVALTRAKYHCTIALVSGRINQFDYYSALGWLLFGKLPQ
GKAILGKLRKDGMQPDERQRLMHTQLAQLVEQSAGGISHEVLPVEETRVCYQADSGEWQP
SIRRYQPRYVPVPKVGSFSGLTSGKDDERPDYDTLVFASTSLSERNSPVAERGSVVAERS
RSEAFPRGAKAGSCLHKMLEELDFTQALAPQQDSVLLPALKRHGLPERWLPAGVQLLENT
LNTPLPAVNLRLCDLPKAQRLDELEFYFPVERLRLKPLQTLLHHHLPAEWDAIHSAIDKL
KFNDLTGYMKGYIDLVFAADGQYFVVDYKSNDLGAMPADYRFEVMQEAMAEHHYYLQYLI
YCLALHRYLQQRLPGYDWQQHVGGALYLFLRGMTPEQAGSGVFFHKPTLALIEALDHLIQ
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccctccacgcccaaagcgtccccctcgttgggacaaacctcatcgaagccagc
gcgggtacgggtaaaacctggacgatttcatggctctacctgcgcctgattgcggtatac
ggtctcaaagtcgacaaaattctggtcgtcacctacaccgaagcggccaccgccgagtta
cgcgcccgcatccgcaaacgcctcgccgatgctttagcctatctggaacaacgcccacac
gccgaaacctacgaatcgttgcccttagaagcgccgctccacgactgcatccaacgcctg
caactggccttggtgagtttcgacgaagcggcggtattcaccattcacggtttctgcaag
cgcgtgttatccgaaaacgcctttgaagcgcggatgccatttgaaactgaattggtaacg
aatgaagacaatctgctcaccgaattaaccgacaaattctggtatcagcatttcctcaaa
cccgatgcgctgcatttacggctgttgcaaaaacgcgggctgaccccggacggtttgctg
gcaaacgtgcgcaatttcattggcaaaccgtatttgcacaccgatattcagcccgtcact
accgaggcatttgcgcaacggcaaagcattttcgagtctgccttgcaagcctgccagcaa
cattgggcgagtgaacgtgaggcgatcattggcttattgctgggtggcgcactcaacggc
agcacctacagcaagcgctatgtgccgaattgggcgagtaaactcgatgcgtattttact
aatccgctggaattgccgtatgaaacctttgaacgctttgccaccaccgcgctgaccgaa
aaaaccaagtccggcaaagccacgccccaacacgcttttttcacacaagtggatgcctta
ctcgccgcccatgacgcgctgtcggaaggcgaacaagccgcgctggaatacttgcgcctg
caattgctgcaccatttacgcgccgaattgcccgtgcgcaaacagcaactcggcattctc
accttcgatgatttgctattgcatttgcgcgaggcgttggaacaacaccccgattttccg
ccgcgtttggcgctgaaatatcaggcggcgttgattgatgagtttcaggatactgacccg
attcagtacgagattttcgagcgcatttaccgcgataaacccgaacagccggtgttttac
gtgggcgaccctaaacaggcgatttacgggtttcggggggcggatatttacacctacctc
aaagccgcgcacagcacgtcggcgcactacacgttgcaacacaatttccggtcgcacccc
gatttgctgcaagcgctcaaccacctgttcgcgcaatccgaccaaccgttccgcagcgac
atccgctacgaagccgtcagcgccggtaaaccacaacacgacatcttcctcccctcgccc
cttgagggagaggggctgggggtgaggggtatttccccgcttcgtttctgggattggaac
acactcgatgaaggctacaacagccccgccgtacaagaacgcattgccgaagccgtcgcc
aacgacattgcccgcctcttaaacgcgggtcgcgaaggtattgcccgaatcggtgaacgc
cccgtagaaagccgcgacattgcggtactcgtgcgcgaaaaccaacagggcgaacaaatc
aaacgcgctttgctggctcgcggcattgccagcgtacaaaaatcacgcgacagcattttc
tgtacccgcgaagccagcgattttcgcgccgtattgcgggcgattgccgaaccgggcaat
gaaaccgccctcaagcaagcgctcgtgaccgaactgtttggtttcaccgccgaagattta
ttcgcgctggatgaaaccccagcgctcttggaagccgaactcgaagccttccaccgttgg
cataaaacctggcattcgcaaggtttcatgccgatgtttcgccagtggatgttgcaacgc
caacgctacgcgcatttgttagccttggcagatggcgaacgtcgtctcaccaatttgttg
catttggcggaactcatccacaccgaaagccgcttgcaagggcatgggatgcacgcgctg
attcgttggttacaacaaaaagccgaagcgggtgaacaagacgaagcgcacgaactccgc
ctagaaagcgatgaaaacttggtgcaaattaccaccatccacaaaagcaaggggctggaa
tacggcattgtgtattgcccgtatttgtgggcagaacgtgacgcgaaaaccagcacttgg
ttcagttggtacgaccgtgacaccgaagcgggcatttcgcgcctgcaagccgaagccttt
gccagtgacgcggcgcttaagtgtttccgcgaagccgaacaagccgaaagtttacgtttg
ctgtacgtcgcgctcactcgtgctaaataccattgcaccattgcgctggtcagcgggcgc
attaaccaattcgactactattcggcactcggttggctgttattcggcaagttaccgcag
ggcaaggcaattctcggcaaattgcgcaaagacgggatgcaacccgatgaacgccaacgt
ttgatgcacacgcaattagcgcagttggtggaacaatcagcaggcggcatcagccatgaa
gtcttgcccgttgaggaaacgcgggtgtgttatcaagccgacagcggtgaatggcaaccc
agcattcgccgctaccagccacgttacgtgccggttcccaaagtcggcagtttcagtggt
ttgacatctggcaaggatgatgaacgcccagactacgatacgctggtgttcgcttcgact
tcgctcagcgaacgaaactctccggtcgctgaacggggtagcgtggtcgctgagcgcagt
cgaagcgaagcattcccacgcggcgcaaaagccggaagctgtttgcacaaaatgctggaa
gaactcgatttcacccaagcgcttgccccccagcaggacagcgtattgctacccgcgttg
aaacgccacggcttgcccgaacgctggctacccgccggtgtgcaactgctggaaaatacc
ctcaatacaccgttgccagccgttaatctgcgtttgtgcgatttgcccaaagcgcaacgc
cttgatgaactcgaattctattttccggtagaacgcttgcgtctgaaaccgctgcaaacc
ttgttgcaccatcaccttcccgccgaatgggacgccattcacagcgctatcgacaagctg
aagttcaatgatttaacgggttatatgaagggctacatcgacttggtatttgccgccgac
gggcagtattttgtggtggattacaagtcgaatgatctgggcgcaatgcctgccgattac
cgtttcgaggtgatgcaagaggcgatggcggaacaccattattacctgcaatatctcatc
tactgtttggcgttacaccgctatttgcaacagcggttgccggggtatgactggcaacag
catgttggtggggcgttgtatttgtttttgcggggcatgacaccggaacaggctggctcc
ggcgtattcttccacaaaccaacgcttgccttgattgaggcgttggatcacttaatccag
taa
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