Thiothrix subterranea: HMY34_18370
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Entry
HMY34_18370 CDS
T07831
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
tsb
Thiothrix subterranea
Pathway
tsb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMY34_18370 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsb03400
]
HMY34_18370 (uvrA)
DNA repair and recombination proteins [BR:
tsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMY34_18370 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMY34_18370 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_23
nSTAND1
AAA_21
AAA_22
RsgA_GTPase
nSTAND3
AAA_25
DnaJ_CXXCXGXG
cobW
Viral_helicase1
ScfRs
UBA_Crd2
Motif
Other DBs
NCBI-ProteinID:
QQZ30561
LinkDB
All DBs
Position
3728089..3730908
Genome browser
AA seq
939 aa
AA seq
DB search
MEKFIRIRGARTHNLKNIDLDLPRDKLIVITGLSGSGKSSLAFDTIFAEGQRRYVESLSA
YARQFLSMMEKPDIDHIEGLSPAISIEQKTTSHNPRSTVGTITEIYDYLRLLYARAGVPR
CPTHHVDLQVQTVSQMVDQVLSLPEGSKLMLLAPVVRERKGEHVQLFDSLRAQGYLRARV
NGVVYELDVPPTLELRKKHTIEVVIDRFKVRDDMQLRLAESFETALKLANGLATVAWMDG
DGEDMIFSANYACPHCGWSLTELEPRLFSFNAPAGACQTCDGLGVEQFFDPQRVVANPSM
SLAGGAVRGWDRRNAYYFQMLTSLAEHFSFDVEQPWDELPASVHKLILHGSGLEEVEFTY
VGQKGQIYTRSHTFEGVLNNLKRRYRETDSSAVREELAKYLASRACPDCGGTRLNEQARN
VFIAGRNLPAITHLPIGESHAFFRSLNLPGTQGQIADKILREIALRLEFLVNVGLDYLTL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNARLLKTLFRLRDLGNT
VIVVEHDEDAIRSADHVLDIGPGAGVHGGYIIAQGTPEEVFATPDSVTGQFMSGRRKITM
PAQRTPFNPERTIKLIGATGNNLNDVSLEIPLGLLTCITGVSGSGKSTLINRTLYPFLAR
HLHDSSVEVAPVREVLGVEQIDKIIDIDQSPIGRTPRSNPATYTGVFTAIRDMFAATQEA
RSRGYLPGRFSFNVKGGRCEACSGDGLIKVEMHFLPDVYVTCEVCDGKRYNRETLDIRYK
GKNISEVLAMTVEDACEFFAAVPSIHTKLQTLMDVGLSYITLGQNATTLSGGEAQRVKLA
KELSKRGTGKTIYILDEPTTGLHFHDVDQLLQVLHRLRDGGNTVVVIEHNLDVIKTADWV
VDLGPEGGSRGGHVIAVGTPEQVAETEGSFTGEFLKRML
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattcatccgcattcgcggcgcacgcacccacaacctgaaaaacatcgacctt
gacctgccgcgtgacaagctgatcgtgatcacgggcttgtcgggttcgggcaagtcgtcg
ctggcgttcgacacgatctttgcggaagggcagcggcgttacgtcgagtcgctgtccgcc
tacgcccgccagttcttgtcgatgatggaaaagccggacatcgaccacatcgaagggctg
tccccggcgatttccatcgagcagaaaaccacctcgcacaacccgcgttccaccgtcggc
acgatcaccgagatttacgactacctgcgcctgctgtatgcgcgggcgggtgtgccgcgt
tgcccgacgcatcacgttgatttgcaagtgcaaaccgtcagccagatggtcgatcaggtg
ttgagtttgcccgaaggcagcaagctgatgttgcttgccccggtggtgcgcgaacgcaag
ggcgagcatgtgcaactgtttgattcgttgcgggcgcaaggctatttgcgggcgcgggta
aatggcgtggtctacgaactggacgtgccgccgacgctggaattgcgcaagaaacacacc
atcgaagtggtgattgaccgtttcaaagtgcgcgacgacatgcagttgcgtctcgccgaa
tcgtttgaaactgcgctgaaactcgccaatgggctggcaacagtggcgtggatggacggt
gacggcgaagacatgattttttccgccaactacgcctgcccgcattgcggctggtcgctg
accgaactcgaaccgcgcttgttctcgttcaacgcacccgctggcgcgtgccagacctgc
gacggcttgggcgtggaacagtttttcgacccgcaacgggtggtggccaatccgtcgatg
agtcttgcggggggcgcggtgcgcggctgggatcggcgcaacgcctactacttccagatg
ctcacgtcgcttgccgaacatttcagctttgacgtggaacagccgtgggacgaattgccc
gcgtctgtccacaaactgatcttgcacggcagcggtttggaggaggtggaattcacctac
gtcgggcaaaaaggccagatttacacccgttcgcacacctttgaaggcgtattgaacaac
ctcaaacgccgttaccgcgaaaccgattcgagtgcggtgcgcgaagaattggcgaaatac
cttgccagccgtgcctgccccgattgcggcggcacacgcttgaacgaacaggcgcggaac
gtgtttatcgcggggcgcaatttgcctgcgatcacgcatttgccgattggtgaaagccat
gcgtttttccgcagcctgaatttgccggggactcaggggcaaattgccgacaagattttg
cgcgaaattgccttgcgcctggaatttttggtcaatgtcgggctggattatttgaccctg
agccgcagcgcggaaacgctttccggcggtgaagcgcaacgcatccgcctcgcctcgcag
attggcgcggggctggttggggtgatgtacgtgctggatgagccatccatcggcttgcac
cagcgcgacaatgcccgcttgctgaaaacgctgttccgcctgcgcgaccttggcaatacc
gtgatcgtggtcgagcatgacgaagacgcgatccgttccgccgaccatgtgctggatatt
ggccccggcgcgggcgtgcatggcgggtacattattgcgcaaggcacgcccgaagaagtg
tttgccacgccggattcggtgacggggcaattcatgtccgggcggcgcaaaatcaccatg
cccgcccaacgcaccccgttcaaccccgaacgcaccatcaaactgattggcgcgaccggc
aataacctcaatgacgtgtcgctggaaattccgctggggctgctgacctgcatcacgggc
gtgtcggggtcgggcaaatcgacgttgatcaaccgcacgctgtacccgtttctggcgcgg
catctgcacgatagcagcgtggaagttgccccggtgcgcgaagtgctgggtgtggagcaa
atcgacaaaatcatcgacatcgaccaaagcccgattgggcgcaccccgcgttccaacccc
gcgacctacacgggcgtgtttaccgcgatccgcgatatgtttgcggcgacgcaggaagcg
cgttcacgcggttatttgccggggcggttttcgttcaacgtcaaaggcggacgctgcgaa
gcgtgttctggtgacggtttgatcaaggtcgaaatgcactttttgccggacgtgtacgtg
acctgcgaagtgtgcgatggcaagcgttacaaccgcgaaacgctcgacatccgctacaag
ggcaagaacatcagcgaagtgctggcgatgacggtggaagatgcctgcgaatttttcgcc
gccgtgccgtcgatccacaccaagctgcaaacgctgatggacgtggggctgtcgtatatt
acgctggggcaaaacgcgaccacgctttccggcggcgaagcgcagcgagtgaagttggcg
aaggagctgtccaaacgcggcacgggcaagacgatttatattctggatgaaccgaccacg
gggctgcatttccatgacgttgaccagttgctgcaagtgctgcaccgcttgcgtgacggt
ggcaataccgtggtggtgatcgagcataatctggatgtgattaagacggcggattgggtg
gtggatttggggccggaaggcgggagtcgtggcgggcatgtgattgctgttggtacgccg
gagcaggtggctgaaactgaagggtcgtttacgggggagttcctgaaacgcatgttgtga
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