Thiothrix subterranea: HMY34_18935
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Entry
HMY34_18935 CDS
T07831
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tsb
Thiothrix subterranea
Pathway
tsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMY34_18935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsb03019
]
HMY34_18935
Enzymes [BR:
tsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMY34_18935
Messenger RNA biogenesis [BR:
tsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMY34_18935
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
UvrD-helicase
AAA_22
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QQZ30660
LinkDB
All DBs
Position
3849691..3851037
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AA seq
448 aa
AA seq
DB search
MLFSELGLSEPLLRAISEQGYDTPTPIQAQGIPAVLSGRDIMAAAQTGTGKTAGFTLPML
HLLSANGNAPKSNHIRALVLTPTRELAAQVGESVRDYGKNLPLTSTVVFGGVSANPQMMA
LRRGLDILVATPGRLLDLYDQNAVKFSQVEMLVLDEADRMLDMGFIRDIRKILALLPKRR
QTLMFSATFSDDIVALTKGLLNNPVQISVSPRNAAANTVTQSVFLVDKARKTALLSHLIR
ENQWEQVLVFSRTKHGANRLAEKLERDGVTAAAIHGNKSQGARTKALADFKQGNIRVLVA
TDIAARGLDIEQLPHVINFELPNVSEDYVHRIGRTGRAGATGEAISLVEPEEYGFLKGIE
KLIKQQLPREPLPTISVAPTRALTAAEIAKDAEADRPRPAQHRPANRRSSSQKSDVRKAA
GLPPVKKAEGAAASKPRRRRPNKPKAVA
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgctattttctgaactcggcttgtccgagccgctgttgcgtgccatcagcgaacagggt
tacgacacccccactcctatccaagcacaaggcattcctgctgttctgtccggtcgcgac
attatggcggcggcgcaaaccggcacgggtaaaaccgctggtttcaccttaccgatgctg
catttgctctcggctaacggcaatgcgcccaaatccaatcatatccgagccttagtgctg
acgccgacccgcgaactggctgctcaagtcggtgaaagcgtgcgcgattacggcaaaaac
ctgccgctgacttctaccgtcgtatttggtggtgtgagtgccaacccgcaaatgatggcg
ttacgccgtggtttggatattctggtggcaacaccggggcgtttgctggatttatacgac
cagaacgcggtgaaattttcccaagtggaaatgctggtgttggacgaagcagatcgcatg
ttggacatggggttcatccgcgacatccgcaaaattctggcgttgttgccgaaacgtcgc
caaacgttgatgttttccgcgacgttctccgacgacatcgtggcgctgaccaagggttta
ttgaataaccctgtgcaaatctcagttagcccacgcaatgcggcggcgaataccgtgacg
caatcggttttcttggtggataaagcgcgtaaaactgcgttgttgagccacttaatccgt
gaaaatcagtgggaacaggtgttggtgttctcgcgcaccaaacacggtgccaaccgtttg
gctgaaaagctcgaacgcgatggcgtaaccgctgctgcgatccacggcaacaaaagccaa
ggcgcacgtaccaaagcactggcggatttcaaacaaggcaatatccgcgtactggtagcg
actgacatcgcggcgcgtggcttggatattgagcaattgccacacgtcatcaacttcgag
ttgccgaacgtgtcggaagattatgtgcaccgtatcgggcgtactgggcgtgcgggcgca
acgggtgaagcgatttccttggtcgaaccggaagaatacggttttctcaaaggcatcgaa
aagctcattaagcagcaattgccccgtgaaccgttgcccacgatcagcgttgccccgacc
cgtgcgttgacggccgccgagattgccaaagatgcggaagcggatcgtccgcgccctgcg
caacatcgccccgctaaccgtcgtagcagctcgcagaagagtgatgtccgcaaagccgct
ggtttgccgccggtgaagaaagccgaaggtgccgcagcgagcaagccgcgtcgccgtcgc
cctaacaagccgaaagcggtcgcgtaa
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