Thiothrix subterranea: HMY34_19230
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Entry
HMY34_19230 CDS
T07831
Symbol
dapE
Name
(GenBank) succinyl-diaminopimelate desuccinylase
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
tsb
Thiothrix subterranea
Pathway
tsb00300
Lysine biosynthesis
tsb01100
Metabolic pathways
tsb01120
Microbial metabolism in diverse environments
tsb01230
Biosynthesis of amino acids
Module
tsb_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
tsb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
HMY34_19230 (dapE)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tsb01002
]
HMY34_19230 (dapE)
Enzymes [BR:
tsb01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
HMY34_19230 (dapE)
Peptidases and inhibitors [BR:
tsb01002
]
Metallo peptidases
Family M20
HMY34_19230 (dapE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Peptidase_M28
Motif
Other DBs
NCBI-ProteinID:
QQZ30714
LinkDB
All DBs
Position
complement(3920950..3922092)
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AA seq
380 aa
AA seq
DB search
MSATLDLAIDLISRPSVTPLDEGCQQLLADRLAPLGFVAEHLRFGDVDNIWLRRGSTSPV
FCFAGHTDVVPTGPLDAWDSHPFQPEIRDGMLYGRGAADMKGSIAAFTIACETFVRENLD
HQGSIAFLITSDEEGPSINGTVKVVEVLEQRNEKIDWCLVGEPSSTCCVGDVVKNGRRGS
LNGVLTVIGQQGHVAYPHLADNPIHRAAPALAELVSIEWDKGNEFFPPTSFQISNIKGGT
GANNVIPGTLHVEFNFRFSTQQTEMGLREQVEAIFNRHGLKYELKWTLSGNPFLTPRGDL
VDASVAAIQAVSGQATELSTAGGTSDGRFIAPTGAQVMELGPVNKTIHKINECVAVDDLN
ALTIIYQKILERLLTKDVPS
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctactctcgatcttgctatcgacttaatttcgcgcccctccgtcacgccattg
gacgaaggttgccagcaattactggctgatcgccttgcgccgctgggctttgttgctgaa
cacctgcgctttggcgacgtggataatatctggctacgccgtggtagcacctcccccgta
ttctgctttgcagggcataccgatgttgtccccaccggcccgctggatgcgtgggatagc
catccgtttcagccagaaattcgtgatggaatgctctacgggcgtggcgctgcggatatg
aaaggcagcattgccgcattcaccattgcttgcgaaaccttcgtgcgcgaaaacctggat
catcaaggttcgattgcatttttgattaccagcgacgaagaaggcccttccatcaatggc
acggtcaaagtcgtggaagtgctagagcagcgcaacgagaaaatcgactggtgcttagtc
ggcgaaccttccagcacttgctgcgtgggtgacgtggtgaaaaacgggcggcgcggttca
ctcaatggcgtactcaccgtgatcgggcagcaagggcatgtggcgtacccgcatttggca
gacaaccccatccaccgcgctgcacctgcgttggcggaactggtgagcatcgaatgggac
aagggcaatgaattcttcccgccaaccagcttccagatttccaatatcaaaggtggaacg
ggtgcgaataatgtgattccgggaacgctgcacgtagaattcaacttccgcttttcgacc
cagcaaacagaaatgggtttgcgcgaacaagtggaagcgatttttaaccgtcacgggttg
aagtatgagctgaaatggacgctttcgggaaacccgtttttgacaccgcgtggcgatttg
gtcgatgcgagtgtcgcagcaattcaggcggtaagcgggcaggccactgaactgtctacc
gcaggcgggacatcagacggacgtttcatcgcgccgacaggtgcacaggtcatggaatta
gggcctgtaaacaaaaccatacataaaatcaacgaatgtgttgcagtcgatgatttaaac
gcactcacgattatttaccagaaaattctggagcgtctgctaacaaaagatgtgccgagc
tga
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