Thermus scotoductus: TSC_c09630
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Entry
TSC_c09630 CDS
T01414
Symbol
rnjA
Name
(GenBank) ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tsc
Thermus scotoductus
Pathway
tsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TSC_c09630 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsc03019
]
TSC_c09630 (rnjA)
Messenger RNA biogenesis [BR:
tsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TSC_c09630 (rnjA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
YAcAr
Motif
Other DBs
NCBI-ProteinID:
ADW21588
UniProt:
E8PPC2
LinkDB
All DBs
Position
complement(916703..918433)
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AA seq
576 aa
AA seq
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MENQERKPRKRRRRRPSDAASLGLGEGKDYVEIIPLGGMGEIGKNITVFRFRDEIFVLDG
GLAFPDEAMPGVDLLIPRVDYLIENRHLIKAWILTHGHEDHIGGLPFILPMVFGKESQVP
IYGAKLTLGLLKGKLEEFGLRPGSFNLKEISPDDRISVGRYFTLDLFRMTHSIPDNSGLV
IRTPVGTIVHTGDFKLDATPIDGKLSHLAKVAQAGAEGVLLLIADSTNAERPGYTPSEME
IAKELDRVIARAPGRVFVTTFASHIHRIQAVIWAAEKYGRKVAMEGRSMVRFSRIAMELG
YLKVKDRLYTLEEVKDLPDHQVLILATGSQGQPMSVLHRLAFEGHAKMAIKPGDTVILSS
SPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHASQEELKLILNLTTPRFFLPWHG
EVRHQTNFKWLAESMSRPPEKTLIGENGAIYRLTRDTFEKVGQVPSGVLYVDGLGVGDIT
EEILADRQHMAEEGIVVITALASQDPVVEVVSRGFVKAGERLLGEVKRMALEALQNGVRE
KKTLERIRDDIYFPVKKFLKKATGRDPMILPVVIEG
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaccaagaacgcaagccaaggaaaagacggcgcagaaggccatcggacgccgct
tccctgggccttggagagggcaaggactatgtggagatcattcccctaggggggatgggg
gagatcggcaagaacatcaccgtcttccgcttccgggacgagattttcgtgctggacggg
gggcttgccttccccgacgaagccatgcccggggtggacctcctcatcccccgggtggac
tacctcatagaaaaccgccacctcatcaaggcctggatcctgacccacggacacgaggac
cacatcggggggcttcccttcatcctccccatggtcttcggaaaggaaagccaggtgccc
atctacggggccaagctcaccctgggcctcctaaaggggaagctggaagagttcggtttg
aggccaggaagcttcaacctcaaggagatctcccccgacgaccgcatcagcgtggggcgc
tacttcaccctggacctcttccgcatgacccactccatccccgataactccggtctggtc
atccgcacccccgtcggcaccatcgtgcacaccggggacttcaagctggacgccaccccc
atagacggtaaactctcccacctggccaaggtggcccaggcgggggcggaaggggtcttg
ctcctcatcgccgactccaccaacgccgagcgccccggttacaccccgagcgagatggag
atcgccaaggagctggaccgggtcatcgcccgggccccgggcagggtcttcgtcaccacc
ttcgccagccacatccatcgcatccaggcggtgatctgggcggcggagaagtacgggcgc
aaggtggccatggaggggcggagcatggtgcggttcagccgcatcgccatggagctgggc
tacctcaaggtgaaggaccgcctctacaccctggaggaggtcaaggacctccccgaccac
caggtgctgatcctggccacgggaagccaggggcagcccatgtccgtcctccaccgcctg
gcctttgaaggccacgccaagatggccatcaagcccggggacacggtgatcctctccagt
agccccatccccggcaacgaggaggcggtgaaccgggtcatcaaccggctctacgccctg
ggggcttacgtcctctacccccctacctacaaggttcacgcctcggggcacgcctcccaa
gaggagctcaagctcatcctgaacctcaccaccccccgtttcttcctcccttggcacggg
gaggtgcgccaccagaccaacttcaagtggctggcggagtccatgagccgtcccccggag
aaaaccctcatcggggagaacggggccatttaccgcttaacccgggacacctttgagaag
gtgggccaggtgccctccggggtcctctatgtggacggcctgggggttggggacatcacc
gaggagatcctggccgaccgccagcacatggccgaggagggaatcgtggtcatcaccgcc
ttagcgagccaggacccggtggtggaggtggtgtcccgggggtttgtcaaggccggggag
cggcttttgggcgaggtgaagcgcatggccctcgaggccctgcaaaacggggtgcgggag
aagaagaccctggaacgcatccgggacgacatctacttcccggtgaaaaagttcctgaag
aaggccacgggccgggatcccatgatccttcccgtggtcatcgaggggtga
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