Thermus scotoductus: TSC_c09640
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Entry
TSC_c09640 CDS
T01414
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tsc
Thermus scotoductus
Pathway
tsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TSC_c09640 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsc03019
]
TSC_c09640 (pnp)
03016 Transfer RNA biogenesis [BR:
tsc03016
]
TSC_c09640 (pnp)
Enzymes [BR:
tsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TSC_c09640 (pnp)
Messenger RNA biogenesis [BR:
tsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TSC_c09640 (pnp)
Transfer RNA biogenesis [BR:
tsc03016
]
Prokaryotic type
tRNA degradation factors
TSC_c09640 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
PCB_OB
S1_2
KH_2
Motif
Other DBs
NCBI-ProteinID:
ADW21589
UniProt:
E8PPC3
LinkDB
All DBs
Position
complement(918492..920636)
Genome browser
AA seq
714 aa
AA seq
DB search
MPEATPNTPQAHRYETQVAGRPLVLEAGKYAKQASGSVLVRYGDTVVLATAQASEEPIEA
DFLPLTVEFEERHYAVGKIPGSFMRREGRPGEKAILSARMTDRPIRPLFPKGFRHEVQVI
VTVLSADQKNPPDILGPTAASAALMLSDIPWEGPVAAVRVGLIGGQFVLNPTLQELSESA
LDLVVAGSRDAILMVEAGAQEVDEEMLVQALEFAHREMQPILDLQEEIARALGKPKMAWT
PPEALSEEEKEAFYRLAVERGLSAVLQTASKGERSRALEAFAEALVAEALPKGEDGTPDE
SKKPLYESAFAEVVRKELRRLVLEEGKRADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGE
TQVLGTVTLGTGRDEQIIDDLGIDETEKFLVHYNFPPFSTGEVKRLRGVSRREIGHGNLA
KRALKAVLPPEEAFPYTIRVVGDVLESNGSSSMATVCAGCLALMDAGVPLKAPVAGVAMG
LVWEGERAVILTDILGLEDALGDMDFKVAGTRKGVTALQMDNKVGGLPREVLKEALMQAR
EARMKILDLMESVLPAPRPELKPFAPRILSLKVPVEKIGLVIGPGGKNVRALEELGVEVD
IEEDGTVRIYSSDMEAAQKAKKRIEELTLEAKVGEIYEGTVTKITPFGAFVSLFPGTEGL
LHISQIAPGRVERVEDHLKVGDVIKVKVHRIDERGKIDLIRPELEGKIPPRRRS
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgccggaagccacacccaacaccccacaggcccataggtacgaaacccaggtggctggc
cgccccctggtgttggaggcagggaaatacgccaaacaggcctcgggctcggtcctggtg
cgctacggcgacaccgtggtcctggccaccgcccaggcctccgaggagcccatagaggcg
gacttccttcccctcaccgtggagtttgaggagcggcactatgccgtgggcaagatcccg
ggaagcttcatgcgccgggaagggcggcctggggaaaaggccattctctccgcccgcatg
acggaccggcccatccgccccctcttccccaaggggttccggcacgaggtacaggtgatc
gtcaccgtgctctccgccgaccagaagaaccccccggacatcctggggcccacggcggcc
agcgccgccctcatgctttcggacattccctgggaaggccccgtggccgcggtgcgggtg
ggcctcattggggggcagttcgtcctgaaccccaccctgcaggagctttcggaaagcgcc
ctggacctggtggtggcgggaagccgggacgccatcctcatggtggaggccggggcccag
gaggtggacgaggaaatgctggtccaggccctggagttcgcccaccgggagatgcagccc
atcctggacctgcaggaggagatagcccgggccctgggcaaacccaagatggcctggacc
ccacccgaggccctcagcgaggaggagaaggaagccttctaccgcttggccgtggagcgg
gggctttccgccgtgctccaaaccgccagcaagggggagaggagccgggccctcgaggcc
tttgccgaggccctggtggccgaggccctgccgaagggggaagacggtaccccggacgaa
agcaaaaagcccctttacgagagcgcctttgccgaggtggtgcgcaaggaactcaggcgg
ctggtcctggaggagggcaagcgggcggacgggcgcacacccaaggacctccggcccatc
tggatcgaggtggacgtcctgccccgcacccatggctccgccgtcttcacccggggggag
acccaggtgctgggcaccgtcaccctgggcacgggacgggacgagcagatcatcgacgac
ctggggattgacgaaacggaaaagttcctggtgcactacaactttccccccttctccacc
ggggaggtcaagcgcctgaggggggtttcccgccgggagataggccacggaaacctggcc
aagcgggccctcaaggcggtcctgcctcccgaggaggccttcccctacaccatccgggtg
gtgggggatgtgctggagtccaatggcagtagctccatggccacggtctgtgcgggatgc
ctggccctgatggacgcgggtgttcccctcaaggccccggtagccggggtggccatgggt
ctggtgtgggagggggagcgggcggtgatcctcaccgacatcctgggactggaggatgcc
ctgggggacatggatttcaaggtggcgggaacccgaaaaggggtcaccgccttgcaaatg
gacaacaaggtgggtgggcttccccgggaggtgctgaaggaagcccttatgcaggcccgt
gaggcccgcatgaagatcctggacctcatggaaagcgtccttcctgccccacgccccgag
ctcaaacccttcgctccccgcatcctctccctaaaggtcccggtggagaagatcggcctc
gtcatcgggcccggggggaagaacgtgcgggccctcgaggagcttggggtggaggtggac
atcgaggaggacgggacggtgcgcatctactccagcgacatggaggcggcccagaaggcc
aagaagcgcatagaggagctcaccttggaggccaaggtgggcgagatctacgagggtacc
gtcaccaagatcaccccctttggggccttcgtgagcctgttccccggcaccgaagggctc
cttcacatcagccagatcgcccccggccgggtggagcgggtggaggaccacttgaaggtg
ggggacgtgatcaaggtcaaggtgcaccgcatcgacgagcggggcaagatcgacctgatc
cggcccgagctggagggcaagatccctcccaggcggcgcagctag
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