Thermus scotoductus: TSC_c14940
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Entry
TSC_c14940 CDS
T01414
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tsc
Thermus scotoductus
Pathway
tsc03410
Base excision repair
tsc03430
Mismatch repair
tsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TSC_c14940 (recJ)
03430 Mismatch repair
TSC_c14940 (recJ)
03440 Homologous recombination
TSC_c14940 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsc03400
]
TSC_c14940 (recJ)
DNA repair and recombination proteins [BR:
tsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TSC_c14940 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TSC_c14940 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TSC_c14940 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_C
DHH
RecJ_OB
DHHA1
PhoU
PCRF
DUF5741
Motif
Other DBs
NCBI-ProteinID:
ADW22111
UniProt:
E8PK80
LinkDB
All DBs
Position
complement(1437113..1439131)
Genome browser
AA seq
672 aa
AA seq
DB search
MKDRVRWRLLPLPPLKEWREVMEAFGVGPEAALAYWHRGVRRPEDLKPSLGLLPLRGLKE
AVELLLWALEGRKRIRIHGDYDADGLTGTAILVRGLRALGAEVHPFIPHRLEEGYGVHPK
RIPEHLEAADLFLTVDCGIANHAELRELVENGVEVLVTDHHTPRDTPPPGVILHPAYTPD
LKEHPTGAGVAFLLLWALHERLGLPPPLEYADLAAVGTIADVAPLWGWNRALVREGLERL
KDSRLLGLRLLAESVGYTGKAVEVAFRIAPRINAASRLGEAEKALRLLLTEDEEEAKGLV
EELNRLNARRQAIEEEMLKRLLPQADPEAKAIVLHDPEGHPGVMGIVASRILEATLRPVF
IVAQGKGTVRSLPPISAVEALRSAEDLLLRYGGHREAAGFAVDEAHFPRFKERVEAFAAS
FPDPVREVPLVGLLPPLTSLPELHQALLALEPFGEGNPEPLFLLQGSPEEARSMGEGKHL
AFRLQGVRVVAWRMGERAAAMPSELEAAVLLVENRWNGTVSYEAQALDFREPGELEGGVE
PFAYPIPLPEALARARMGEGVYVPEDNPEGLEYAKGAGFRLLSPGEATLWLGIPPTPVGI
PRGPVYVALGAGARARLLAPPTLPTDGERLRALVGQRLLFAYQRGHAPLFSEALLAYWAV
LSDRAHALPNRG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaccgggtgcgctggcgtcttctccccttgccgcccttgaaggagtggcgggag
gtgatggaggcctttggggtggggccggaggctgccttggcctactggcaccggggggtg
cgccgccctgaggacctgaagccttccctgggccttcttcccctcaggggcctgaaggag
gcggtggagcttctcctttgggcgctagaggggaggaagcgcatccgcatccacggggac
tacgatgcggatggcctcaccggaaccgccatcctggtgcggggcctcagggccttgggg
gcggaggtgcatccctttatcccccatcgcctcgaggaagggtatggagtccaccccaag
cgcatccccgagcacctggaagccgccgatctgttcctgacggtggactgcggcatcgcc
aaccatgccgagcttcgggagctggtggaaaacggggtggaggttctggtgaccgaccac
cacacgccccgcgatacccctcctccgggtgtcattctccatcccgcctacaccccggac
cttaaggagcaccccacgggggccggggtggccttcctgctcctctgggccctccatgag
cggctgggcctgcccccgcccctggagtacgccgacctggcggcggtgggcaccatcgcc
gacgtggcccccctttgggggtggaaccgggccttggtgcgggaagggcttgagcgcctt
aaggactcccgcctcttggggcttcgcctccttgcggaaagtgtgggctacacggggaag
gcggtggaggtggccttccgcatcgccccccgcatcaatgcggcaagccgcctgggggag
gcggagaaagcccttaggcttctcctcacggaggacgaggaggaggccaagggtttggtg
gaggagctgaaccggctgaacgcccgccgccaggccatagaggaggagatgcttaaaagg
cttcttccccaggcggatcccgaggccaaggccatcgttctgcacgatcccgaggggcat
ccgggggtgatgggcatcgtggcgagccgcatcctcgaggccaccttgcgcccggtcttc
atcgtggctcaggggaagggcacggtgcgaagcctcccccccatcagcgccgtggaggcc
ttaaggagtgccgaggaccttcttctccgctatggaggccaccgggaggctgcgggcttt
gccgtggatgaggcccatttcccccggtttaaggagcgggtggaggcctttgccgcctcc
ttccccgaccctgtgcgggaagtgccccttgtagggcttttaccccctttgacgtcactt
ccggagcttcaccaagccttgctggccttagagccctttggggaagggaatcccgagccc
cttttccttctccaaggctccccggaggaggcccggtccatgggggaggggaagcacctc
gccttccgcctgcagggggttagggtggtggcctggcgcatgggggagcgggcggccgct
atgccctcggagttggaagccgccgtcttactggtggaaaaccgctggaacggtaccgtg
tcctatgaggcccaggccctggacttccgcgagcccggggagcttgagggaggggtggag
ccctttgcctatcccattcctttgcccgaggccttggcccgagccaggatgggggagggg
gtatacgttcccgaggataaccccgagggcctggagtatgcgaagggggcggggtttcgc
ctattaagccctggggaagctacgctttggctagggataccccccacccccgtggggatt
ccccgcggtccggtgtatgtggccctgggggcgggtgcccgggccaggctcctggctccg
cccacgctccccacggacggggagcggcttagggccttggtggggcagaggctcctcttc
gcctatcagcgagggcatgccccccttttcagcgaggccctgttggcctactgggcggtt
ttgtccgatagggcgcatgcattgccgaatagggggtga
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